Jatropha Genome Database
- JcCB0152181.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0152181.10 - phase: 1 /pseudo/partial
(302 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G25490.1 | Symbols: EBF1, FBL6 | EBF1 (EIN3-BINDING F BOX PRO... 357 4e-99
AT5G25350.1 | Symbols: EBF2 | EBF2 (EIN3-BINDING F BOX PROTEIN 2... 291 5e-79
AT4G15475.1 | Symbols: | F-box family protein (FBL4) | chr4:884... 98 7e-21
AT5G23340.1 | Symbols: | INVOLVED IN: biological_process unknow... 87 2e-17
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | SKP2B; ubiquitin-protei... 81 7e-16
AT3G58530.1 | Symbols: | F-box family protein-related | chr3:21... 77 2e-14
AT5G01720.1 | Symbols: | F-box family protein (FBL3) | chr5:267... 70 1e-12
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 62 4e-10
AT2G06040.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 61 1e-09
AT1G55590.1 | Symbols: | F-box family protein | chr1:20769476-2... 60 2e-09
AT3G07550.2 | Symbols: | F-box family protein (FBL12) | chr3:24... 59 4e-09
AT3G07550.1 | Symbols: | F-box family protein (FBL12) | chr3:24... 59 4e-09
AT1G21410.1 | Symbols: SKP2A | SKP2A | chr1:7497479-7499386 FORWARD 59 4e-09
AT2G17020.1 | Symbols: | F-box family protein (FBL10) | chr2:73... 55 4e-08
AT3G50080.1 | Symbols: VFB2 | VFB2 (VIER F-BOX PROTEINE 2); ubiq... 54 1e-07
AT5G21900.1 | Symbols: | unknown protein | chr5:7238239-7240338... 52 5e-07
AT1G47056.1 | Symbols: VFB1 | VFB1 (VIER F-BOX PROTEINE 1); ubiq... 52 6e-07
AT4G07400.1 | Symbols: VFB3 | VFB3 (VIER F-BOX PROTEINE 3); ubiq... 52 7e-07
AT1G80570.2 | Symbols: | F-box family protein (FBL14) | chr1:30... 51 8e-07
AT1G80570.1 | Symbols: | F-box family protein (FBL14) | chr1:30... 51 8e-07
AT1G80570.3 | Symbols: | F-box family protein (FBL14) | chr1:30... 51 8e-07
AT5G67250.1 | Symbols: SKIP2, VFB4 | SKIP2 (SKP1/ASK1 INTERACTIN... 50 2e-06
AT4G33210.1 | Symbols: | F-box family protein (FBL15) | chr4:16... 48 6e-06
>AT2G25490.1 | Symbols: EBF1, FBL6 | EBF1 (EIN3-BINDING F BOX
PROTEIN 1); protein binding / ubiquitin-protein ligase |
chr2:10848018-10850275 REVERSE
Length = 628
Score = 357 bits (917), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 177/286 (61%), Positives = 222/286 (77%), Gaps = 3/286 (1%)
Query: 17 RGVTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAAQSLEVLQLEECHRIAQLGF 76
+GVTD G+E++G+ + GLVSF KA+ SLE LQLEECHR+ Q GF
Sbjct: 346 QGVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKASLSLESLQLEECHRVTQFGF 405
Query: 77 FGSLLNSGSKLKALSLVNCMGIRELNLRLPQVPPCNSLRSLSIRNCPGFGDGGLALLGKL 136
FGSLLN G KLKA SLVNC+ IR+L LP C++LRSLSIRNCPGFGD LA +GKL
Sbjct: 406 FGSLLNCGEKLKAFSLVNCLSIRDLTTGLPASSHCSALRSLSIRNCPGFGDANLAAIGKL 465
Query: 137 CPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEV 196
CPQL++++L GL G+T++GF+ L++ + LVK+N SGC NLTD+V+SA+T ++GWTLEV
Sbjct: 466 CPQLEDIDLCGLKGITESGFLHLIQ---SSLVKINFSGCSNLTDRVISAITARNGWTLEV 522
Query: 197 LNLDGCGKITDESLTAIAENCLMLSDLDVSKCAISDSGLMVLARSNQLNLQIFSVAGCSM 256
LN+DGC ITD SL +IA NC +LSDLD+SKCAISDSG+ LA S++L LQI SVAGCSM
Sbjct: 523 LNIDGCSNITDASLVSIAANCQILSDLDISKCAISDSGIQALASSDKLKLQILSVAGCSM 582
Query: 257 ISDKSLPAIVKMGHTLLGLNIQHCNAISSSTVDLLVERLWRCDILS 302
++DKSLPAIV +G TLLGLN+Q C +IS+STVD LVERL++CDILS
Sbjct: 583 VTDKSLPAIVGLGSTLLGLNLQQCRSISNSTVDFLVERLYKCDILS 628
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 9/276 (3%)
Query: 19 VTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAAQSLEVLQLEECHRIAQLGFFG 78
V+D G+ ++GR + G+ + N + GL+ + LE L+L C I G
Sbjct: 164 VSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLV- 222
Query: 79 SLLNSGSKLKALSLVNCMGIRELNLRLPQVPPCNSLRSLSIRNCPGFGDGGLA-LLGKLC 137
++ S L L+L C I + L L C+ L+S+SI+NCP D G+A LL
Sbjct: 223 AIAKSCPNLTELTLEACSRIGDEGL-LAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTT 281
Query: 138 PQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHG-WTLEV 196
L L+L L+ VTD + ++ + + + L+G ++++K + G L
Sbjct: 282 CSLAKLKLQMLN-VTDVS-LAVVGHYGLSITDLVLAGLSHVSEKGFWVMGNGVGLQKLNS 339
Query: 197 LNLDGCGKITDESLTAIAENCLMLSDLDVSKCA-ISDSGLMVLARSNQLNLQIFSVAGCS 255
L + C +TD L ++ + C + +SK +SD+GL+ A+++ L+L+ + C
Sbjct: 340 LTITACQGVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKAS-LSLESLQLEECH 398
Query: 256 MISDKS-LPAIVKMGHTLLGLNIQHCNAISSSTVDL 290
++ +++ G L ++ +C +I T L
Sbjct: 399 RVTQFGFFGSLLNCGEKLKAFSLVNCLSIRDLTTGL 434
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 10/151 (6%)
Query: 114 LRSLSIR--NCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVN 171
L LSIR N D GL +G+ CP L +L L + +TD G + + E C A L K+
Sbjct: 151 LGKLSIRGSNSAKVSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGC-AQLEKLE 209
Query: 172 LSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKCA-I 230
L+ C +TDK + A+ + L L L+ C +I DE L AIA +C L + + C +
Sbjct: 210 LNRCSTITDKGLVAIAKSCP-NLTELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCPLV 268
Query: 231 SDSGLMVLARSN-----QLNLQIFSVAGCSM 256
D G+ L + +L LQ+ +V S+
Sbjct: 269 RDQGIASLLSNTTCSLAKLKLQMLNVTDVSL 299
>AT5G25350.1 | Symbols: EBF2 | EBF2 (EIN3-BINDING F BOX PROTEIN 2);
protein binding | chr5:8794842-8796882 REVERSE
Length = 623
Score = 291 bits (744), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 161/287 (56%), Positives = 194/287 (67%), Gaps = 2/287 (0%)
Query: 17 RGVTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAAQSLEVLQLEECHRIAQLGF 76
RG+TD G+EA+G + GLV+ K+A SLE L+LEECHRI Q G
Sbjct: 336 RGMTDVGLEAVGNGCPDLKHVSLNKCLLVSGKGLVALAKSALSLESLKLEECHRINQFGL 395
Query: 77 FGSLLNSGSKLKALSLVNCMGIRELNLRLPQVPPCNSL-RSLSIRNCPGFGDGGLALLGK 135
G L+N GSKLKA SL NC+GI + N P S RSLSIR CPGFGD LA LGK
Sbjct: 396 MGFLMNCGSKLKAFSLANCLGISDFNSESSLPSPSCSSLRSLSIRCCPGFGDASLAFLGK 455
Query: 136 LCPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLE 195
C QLQ++EL GL+GVTDAG LL++ GLVKVNLS C+N++D VSA++ HG TLE
Sbjct: 456 FCHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLSECINVSDNTVSAISVCHGRTLE 515
Query: 196 VLNLDGCGKITDESLTAIAENCLMLSDLDVSKCAISDSGLMVLARS-NQLNLQIFSVAGC 254
LNLDGC IT+ SL A+A+NC ++DLD+S +SD G+ LA S N LNLQ+ S+ GC
Sbjct: 516 SLNLDGCKNITNASLVAVAKNCYSVNDLDISNTLVSDHGIKALASSPNHLNLQVLSIGGC 575
Query: 255 SMISDKSLPAIVKMGHTLLGLNIQHCNAISSSTVDLLVERLWRCDIL 301
S I+DKS I K+G TLLGLNIQ C ISSSTVD L+E LWRCDIL
Sbjct: 576 SSITDKSKACIQKLGRTLLGLNIQRCGRISSSTVDTLLENLWRCDIL 622
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 34/152 (22%)
Query: 111 CNSLRSLSIRNCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKV 170
C SLR +S+ N P D GL+ + + CP ++ L+LS G+TD+G + + EN
Sbjct: 166 CPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAEN-------- 217
Query: 171 NLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKCA- 229
CVNL+D L +D C + +E L AIA C+ L + + C
Sbjct: 218 ----CVNLSD----------------LTIDSCSGVGNEGLRAIARRCVNLRSISIRSCPR 257
Query: 230 ISDSGL-MVLARS----NQLNLQIFSVAGCSM 256
I D G+ +LA++ ++ LQ+ +V+G S+
Sbjct: 258 IGDQGVAFLLAQAGSYLTKVKLQMLNVSGLSL 289
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 130/289 (44%), Gaps = 19/289 (6%)
Query: 5 LAEVEVVCSYIMRGVTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAAQSLEVLQ 64
L ++++ S VTD G+ A+ + + N + +GL ++ +E L
Sbjct: 140 LGKLQIRGSGFESKVTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLD 199
Query: 65 LEECHRIAQLGFFGSLLNSGSKLKALSLVNCMGIRELNLRLPQVPPCNSLRSLSIRNCPG 124
L C I G ++ + L L++ +C G+ LR C +LRS+SIR+CP
Sbjct: 200 LSRCPGITDSGLV-AIAENCVNLSDLTIDSCSGVGNEGLR-AIARRCVNLRSISIRSCPR 257
Query: 125 FGDGGLALL----GKLCP--QLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNL 178
GD G+A L G +LQ L +SGL + ++ + A + + L G +
Sbjct: 258 IGDQGVAFLLAQAGSYLTKVKLQMLNVSGLS-------LAVIGHYGAAVTDLVLHGLQGV 310
Query: 179 TDKVVSALTEQHGW-TLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKC-AISDSGLM 236
+K + G L+ L++ C +TD L A+ C L + ++KC +S GL+
Sbjct: 311 NEKGFWVMGNAKGLKKLKSLSVMSCRGMTDVGLEAVGNGCPDLKHVSLNKCLLVSGKGLV 370
Query: 237 VLARSNQLNLQIFSVAGCSMISDKSLPA-IVKMGHTLLGLNIQHCNAIS 284
LA+S L+L+ + C I+ L ++ G L ++ +C IS
Sbjct: 371 ALAKS-ALSLESLKLEECHRINQFGLMGFLMNCGSKLKAFSLANCLGIS 418
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 141/346 (40%), Gaps = 62/346 (17%)
Query: 5 LAEVEVVCSYIMR-------GVTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAA 57
L+E+ C I + G+TD+G+ A+ + GL + +
Sbjct: 185 LSEIARSCPMIEKLDLSRCPGITDSGLVAIAENCVNLSDLTIDSCSGVGNEGLRAIARRC 244
Query: 58 QSLEVLQLEECHRIAQLGFFGSLLNSGSKLK------------ALSLVNCMGIRELNLRL 105
+L + + C RI G L +GS L +L+++ G +L L
Sbjct: 245 VNLRSISIRSCPRIGDQGVAFLLAQAGSYLTKVKLQMLNVSGLSLAVIGHYGAAVTDLVL 304
Query: 106 PQVPPCN--------------SLRSLSIRNCPGFGDGGLALLGKLCPQLQN--------- 142
+ N L+SLS+ +C G D GL +G CP L++
Sbjct: 305 HGLQGVNEKGFWVMGNAKGLKKLKSLSVMSCRGMTDVGLEAVGNGCPDLKHVSLNKCLLV 364
Query: 143 -----------------LELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTD-KVVS 184
L+L H + G + L NC + L +L+ C+ ++D S
Sbjct: 365 SGKGLVALAKSALSLESLKLEECHRINQFGLMGFLMNCGSKLKAFSLANCLGISDFNSES 424
Query: 185 ALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKC-AISDSGLMVLARSNQ 243
+L +L L++ C D SL + + C L D+++ ++D+G+ L +SN
Sbjct: 425 SLPSPSCSSLRSLSIRCCPGFGDASLAFLGKFCHQLQDVELCGLNGVTDAGVRELLQSNN 484
Query: 244 LNLQIFSVAGCSMISDKSLPAI-VKMGHTLLGLNIQHCNAISSSTV 288
+ L +++ C +SD ++ AI V G TL LN+ C I+++++
Sbjct: 485 VGLVKVNLSECINVSDNTVSAISVCHGRTLESLNLDGCKNITNASL 530
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 190 HGW-TLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKC-AISDSGLMVLARSNQLNLQ 247
HG +L +++L ++D L+ IA +C M+ LD+S+C I+DSGL+ +A N +NL
Sbjct: 164 HGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAE-NCVNLS 222
Query: 248 IFSVAGCSMISDKSLPAIVKMGHTLLGLNIQHCNAISSSTVDLLVER 294
++ CS + ++ L AI + L ++I+ C I V L+ +
Sbjct: 223 DLTIDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGDQGVAFLLAQ 269
>AT4G15475.1 | Symbols: | F-box family protein (FBL4) |
chr4:8845927-8848701 FORWARD
Length = 610
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 141/282 (50%), Gaps = 11/282 (3%)
Query: 14 YIMRGVTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAAQSLEVLQLEECHRIAQ 73
Y + TD G+ A+G+ ++ + Y GL + + LE +++ CH I
Sbjct: 302 YSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGT 361
Query: 74 LGFFGSLLNSGSKLKALSLVNCMGIRELNLRLPQVPP-CNSLRSLSIRNCPGFGDGGLAL 132
G ++ S +LK L+L+ C I N L ++ C SL L + +C G GD +
Sbjct: 362 RGI-EAIGKSCPRLKELALLYCQRIG--NSALQEIGKGCKSLEILHLVDCSGIGDIAMCS 418
Query: 133 LGKLCPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGW 192
+ K C L+ L + + + + G I + ++C++ L +++L C + +K + A+ + G
Sbjct: 419 IAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKS-LTELSLRFCDKVGNKALIAIGK--GC 475
Query: 193 TLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKCAISDSGLMVLARSNQ--LNLQIFS 250
+L+ LN+ GC +I+D +TAIA C L+ LD+S + + G M LA + L+
Sbjct: 476 SLQQLNVSGCNQISDAGITAIARGCPQLTHLDIS--VLQNIGDMPLAELGEGCPMLKDLV 533
Query: 251 VAGCSMISDKSLPAIVKMGHTLLGLNIQHCNAISSSTVDLLV 292
++ C I+D L +V+ L ++ +C I+S+ V +V
Sbjct: 534 LSHCHHITDNGLNHLVQKCKLLETCHMVYCPGITSAGVATVV 575
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 11/209 (5%)
Query: 79 SLLNSGSKLKALSLVNCMGIRELNL-RLPQVPPCNSLRSLSIRNCPGFGDGGLALLGKLC 137
+L N +++ LSL+ C + + L L Q C SL+SL ++ C GD GLA +GK C
Sbjct: 134 ALANGFPRIENLSLIWCPNVSSVGLCSLAQ--KCTSLKSLDLQGCY-VGDQGLAAVGKFC 190
Query: 138 PQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVL 197
QL+ L L G+TD G I L+ C L + ++ +TD + A+ H LEVL
Sbjct: 191 KQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVG-SHCKLLEVL 249
Query: 198 NLDGCGKITDESLTAIAENCLMLSDLDVSKCAISDSGLMVLARSNQL--NLQIFSVAGCS 255
LD I D+ L A+A+ C L +L + +++D + A +L +L+ ++
Sbjct: 250 YLDS-EYIHDKGLIAVAQGCHRLKNLKLQCVSVTD---VAFAAVGELCTSLERLALYSFQ 305
Query: 256 MISDKSLPAIVKMGHTLLGLNIQHCNAIS 284
+DK + AI K L L + C +S
Sbjct: 306 HFTDKGMRAIGKGSKKLKDLTLSDCYFVS 334
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 29/204 (14%)
Query: 111 CNSLRSLSIRNCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKV 170
C SL L++ + F D G+ +GK +L++L LS + V+ G + C+ L +V
Sbjct: 293 CTSLERLALYSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKE-LERV 351
Query: 171 NLSGCVNLTDKVV-----------------------SALTE--QHGWTLEVLNLDGCGKI 205
++GC N+ + + SAL E + +LE+L+L C I
Sbjct: 352 EINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGI 411
Query: 206 TDESLTAIAENCLMLSDLDVSKC-AISDSGLMVLARSNQLNLQIFSVAGCSMISDKSLPA 264
D ++ +IA+ C L L + +C I + G++ + + + +L S+ C + +K+L A
Sbjct: 412 GDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCK-SLTELSLRFCDKVGNKALIA 470
Query: 265 IVKMGHTLLGLNIQHCNAISSSTV 288
I K G +L LN+ CN IS + +
Sbjct: 471 IGK-GCSLQQLNVSGCNQISDAGI 493
>AT5G23340.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Leucine-rich repeat,
cysteine-containing subtype (InterPro:IPR006553); BEST
Arabidopsis thaliana protein match is: F-box family
protein (FBL4) (TAIR:AT4G15475.1); Has 9095 Blast hits
to 3545 proteins in 210 species: Archae - 0; Bacteria -
454; Metazoa - 4575; Fungi - 774; Plants - 2118; Viruses
- 15; Other Eukaryotes - 1159 (source: NCBI BLink). |
chr5:7856314-7857983 FORWARD
Length = 405
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 3/181 (1%)
Query: 114 LRSLSIRNCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLS 173
LR L++ NC G D GLA +G+ LQ L++S ++D G + E C L ++L+
Sbjct: 100 LRVLNLHNCKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCH-DLRALHLA 158
Query: 174 GCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKCA-ISD 232
GC +TD+ + +L+E+ LE L L GC ITD L + + C + LD++KC+ + D
Sbjct: 159 GCRFITDESLKSLSER-CRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGD 217
Query: 233 SGLMVLARSNQLNLQIFSVAGCSMISDKSLPAIVKMGHTLLGLNIQHCNAISSSTVDLLV 292
+G+ +A++ +L+ + C + ++S+ ++ + L L I C IS ++ LL
Sbjct: 218 AGVSSVAKACASSLKTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISDESIMLLA 277
Query: 293 E 293
+
Sbjct: 278 D 278
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 124/290 (42%), Gaps = 23/290 (7%)
Query: 17 RGVTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAAQSLEVLQLEECHRIAQLGF 76
+G+TD G+ ++GR GL + + L L L C I
Sbjct: 109 KGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDES- 167
Query: 77 FGSLLNSGSKLKALSLVNCMGIRELNLRLPQVPPCNSLRSLSIRNCPGFGDGGLALLGKL 136
SL L+AL L C I + L V C ++SL I C GD G++ + K
Sbjct: 168 LKSLSERCRDLEALGLQGCTNITDSGL-ADLVKGCRKIKSLDINKCSNVGDAGVSSVAKA 226
Query: 137 CP-QLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLE 195
C L+ L+L + V + L + C+ L + + GC +++D+ + L + +L+
Sbjct: 227 CASSLKTLKLLDCYKVGNESISSLAQFCK-NLETLIIGGCRDISDESIMLLADSCKDSLK 285
Query: 196 VLNLDGCGKITDESLTAIAENCLMLSDLDVSKC-AISDSGLMVLARSNQLNLQIFSVAGC 254
L +D C I+D SL+ I + C L LD+ C ++D+ L + L L++ V+ C
Sbjct: 286 NLRMDWCLNISDSSLSCILKQCKNLEALDIGCCEEVTDTAFRDLGSDDVLGLKVLKVSNC 345
Query: 255 SMIS--------DK----------SLPAIVKMGHTLLGLNIQHCNAISSS 286
+ I+ DK SLP + ++ + GL C ++ S
Sbjct: 346 TKITVTGIGKLLDKCSSLEYIDVRSLPHVTEVRCSEAGLEFPKCCKVNFS 395
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | SKP2B; ubiquitin-protein
ligase | chr1:28940888-28942401 FORWARD
Length = 360
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 13/206 (6%)
Query: 102 NLRLPQVPPCNSLRSLSIR-NCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLL 160
+L L P L++L +R + P D + + C +LQ+L+LS +TD L
Sbjct: 80 SLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLA 139
Query: 161 ENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGK-ITDESLTAIAENCLM 219
C L K+NLSGC + +D ++ LT + L++LNL GC + ++D +L AI ENC
Sbjct: 140 RGC-TNLTKLNLSGCTSFSDTALAHLT-RFCRKLKILNLCGCVEAVSDNTLQAIGENCNQ 197
Query: 220 LSDLDVSKCA-ISDSGLMVLARSNQLNLQIFSVAGCSMISDKSLPAIVKMGHTLLGLNIQ 278
L L++ C ISD G+M LA +L+ + C +I+D+S+ A+ L L +
Sbjct: 198 LQSLNLGWCENISDDGVMSLAYGCP-DLRTLDLCSCVLITDESVVALANRCIHLRSLGLY 256
Query: 279 HCNAISSSTVDLLVE-------RLWR 297
+C I+ + L + +WR
Sbjct: 257 YCRNITDRAMYSLAQSGVKNKHEMWR 282
>AT3G58530.1 | Symbols: | F-box family protein-related |
chr3:21645759-21648219 FORWARD
Length = 353
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 9/208 (4%)
Query: 86 KLKALSLVNCMGIRELNLRLPQVPPCNSLRSLSIRN---CPGFGDGGLALLGKLCPQLQN 142
++K ++L G+ + +L+L + ++L SL N C D G+ + +CP+L+
Sbjct: 82 QVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAITSICPKLKV 141
Query: 143 LELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGC 202
+ VTDAG L++NC + +NLSGC +LTDK + + E + LE LN+ C
Sbjct: 142 FSIYWNVRVTDAGIRNLVKNCR-HITDLNLSGCKSLTDKSMQLVAESYP-DLESLNITRC 199
Query: 203 GKITDESLTAIAENCLMLSDLDVSKCA-ISDSGLMVLARSNQLNLQIFSVAGCSMISDKS 261
KITD+ L + + C L L++ + +D M + S +L+ + G ISD+
Sbjct: 200 VKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKI--SLLADLRFLDICGAQNISDEG 257
Query: 262 LPAIVKMGHTLLGLNIQHCNAISSSTVD 289
+ I K L LN+ C I+ + V+
Sbjct: 258 IGHIAKCNK-LESLNLTWCVRITDAGVN 284
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 35/260 (13%)
Query: 37 FAFGNAYSYPTMGLVSFVKAAQSLEVLQLEECHRIAQLGFFGSLLNSGSKLKALSLV--- 93
FA G S+ + A SLE L L C +I+ G ++ + KLK S+
Sbjct: 90 FAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGI-EAITSICPKLKVFSIYWNV 148
Query: 94 ------------NCMGIRELNLR------------LPQVPPCNSLRSLSIRNCPGFGDGG 129
NC I +LNL + + P L SL+I C D G
Sbjct: 149 RVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYP--DLESLNITRCVKITDDG 206
Query: 130 LALLGKLCPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQ 189
L + + C LQ L L L G TD ++ + + A L +++ G N++D+ + + +
Sbjct: 207 LLQVLQKCFSLQTLNLYALSGFTDKAYMKI--SLLADLRFLDICGAQNISDEGIGHIAKC 264
Query: 190 HGWTLEVLNLDGCGKITDESLTAIAENCLMLSDLDV-SKCAISDSGLMVLARSNQLNLQI 248
+ LE LNL C +ITD + IA +C L L + ++D L L+++ L
Sbjct: 265 NK--LESLNLTWCVRITDAGVNTIANSCTSLEFLSLFGIVGVTDRCLETLSQTCSTTLTT 322
Query: 249 FSVAGCSMISDKSLPAIVKM 268
V GC+ I +S +++M
Sbjct: 323 LDVNGCTGIKRRSREELLQM 342
>AT5G01720.1 | Symbols: | F-box family protein (FBL3) |
chr5:267118-270391 REVERSE
Length = 665
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 35/278 (12%)
Query: 3 SWLAEVEVVCSYIMRG--VTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAAQSL 60
S L +V + S + G VT G++A+G + + + S GL S V + L
Sbjct: 298 SSLKKVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDL 357
Query: 61 EVLQLEECHRIAQLGFFGSLLNSGSKLKALSLVNCMGI-RELNLRLPQVPPCNSLRSLSI 119
L + C +++++ + NS L +L + +C + RE + Q C L L +
Sbjct: 358 RKLDITCCRKLSRVSI-TQIANSCPLLVSLKMESCSLVSREAFWLIGQ--KCRLLEELDL 414
Query: 120 RN------------------------CPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAG 155
+ C D GL+ +G C L+ L+L G+TD G
Sbjct: 415 TDNEIDDEGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVG 474
Query: 156 FIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAE 215
+ + C L +N+S C ++TDK + +L++ L+ GC IT + L AIA
Sbjct: 475 ISTIAQGC-IHLETINISYCQDITDKSLVSLSKCS--LLQTFESRGCPNITSQGLAAIAV 531
Query: 216 NCLMLSDLDVSKC-AISDSGLMVLARSNQLNLQIFSVA 252
C L+ +D+ KC +I+D+GL+ LA +Q NL+ +V+
Sbjct: 532 RCKRLAKVDLKKCPSINDAGLLALAHFSQ-NLKQINVS 568
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 53/224 (23%)
Query: 111 CNSLRSLSIRNCPGFGDGGLALLGKLCPQLQNLELS------------------------ 146
C L ++S++ C G GD G+ LL C ++ L+LS
Sbjct: 175 CKKLNTVSLKWCVGVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLE 234
Query: 147 GLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGW-------------- 192
G GV D L +C++ L K++ S C NLT + +++L G+
Sbjct: 235 GCFGVDDDSLKSLRHDCKS-LKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVIS 293
Query: 193 -----------TLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKC-AISDSGLMVLAR 240
L+ + LDGC +T + L AI C L ++ +SKC +++D GL L
Sbjct: 294 LDFASSLKKVSALQSIRLDGCS-VTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVM 352
Query: 241 SNQLNLQIFSVAGCSMISDKSLPAIVKMGHTLLGLNIQHCNAIS 284
+ +L+ + C +S S+ I L+ L ++ C+ +S
Sbjct: 353 KLK-DLRKLDITCCRKLSRVSITQIANSCPLLVSLKMESCSLVS 395
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE
Length = 642
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 99/245 (40%), Gaps = 35/245 (14%)
Query: 19 VTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAAQSLEVLQLEECHRIAQLGFFG 78
VTD I A+ + + GT + + GL S + ++ L L +C+ + G
Sbjct: 364 VTDVAISAVAQSCRNLGTLKLESCHLITEKGLQSLGCYSMLVQELDLTDCYGVNDRGL-- 421
Query: 79 SLLNSGSKLKALSLVNCMGIRELNLRLPQVPPCNSLRSLSIRNCPGFGDGGLALLGKLCP 138
++ S L+ L L C I + + C+ L L + C GFGD GLA L + C
Sbjct: 422 EYISKCSNLQRLKLGLCTNISDKGI-FHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCK 480
Query: 139 QLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLN 198
L L LS C LTD V + + L L
Sbjct: 481 SLNRL---------------------------ILSYCCELTDTGVEQIRQLE--LLSHLE 511
Query: 199 LDGCGKITDESLTAIAENCLMLSDLDVSKCA-ISDSGLMVLARSNQLNLQIFSVAGCSMI 257
L G IT L AIA C L LDV C I DSG LA ++ NL+ ++ CS +
Sbjct: 512 LRGLKNITGVGLAAIASGCKKLGYLDVKLCENIDDSGFWALAYFSK-NLRQINLCNCS-V 569
Query: 258 SDKSL 262
SD +L
Sbjct: 570 SDTAL 574
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 151 VTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESL 210
VTD G I L NC L +NL+ C +TD +SA+ Q L L L+ C IT++ L
Sbjct: 338 VTDIGMISLARNC-LNLKTLNLACCGFVTDVAISAVA-QSCRNLGTLKLESCHLITEKGL 395
Query: 211 TAIAENCLMLSDLDVSKC-AISDSGLMVLARSNQLNLQIFSVAGCSMISDKSLPAIVKMG 269
++ +++ +LD++ C ++D GL +++ + NLQ + C+ ISDK + I
Sbjct: 396 QSLGCYSMLVQELDLTDCYGVNDRGLEYISKCS--NLQRLKLGLCTNISDKGIFHIGSKC 453
Query: 270 HTLLGLNIQHC 280
LL L++ C
Sbjct: 454 SKLLELDLYRC 464
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 134/296 (45%), Gaps = 40/296 (13%)
Query: 18 GVTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAAQSLEVLQLEECHRIAQLGFF 77
V G+E + R+ + + + + +A L L++++C ++ +G
Sbjct: 107 AVRARGLETLARMCHALERVDVSHCWGFGDREAAAL-SSATGLRELKMDKCLSLSDVG-L 164
Query: 78 GSLLNSGSKLKALSLVNCMGIRELNLRLPQVPPCNSLRSL----------SIR------- 120
++ S L +SL CM I +L + L C L+SL SIR
Sbjct: 165 ARIVVGCSNLNKISLKWCMEISDLGIDL-LCKICKGLKSLDVSYLKITNDSIRSIALLVK 223
Query: 121 -------NCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLS 173
+CP DGGL L P LQ ++++ V+ +G I ++ + + S
Sbjct: 224 LEVLDMVSCPLIDDGGLQFLENGSPSLQEVDVTRCDRVSLSGLISIVRG-HPDIQLLKAS 282
Query: 174 GCVNLTD----KVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKCA 229
CV+ K + L L+ + +DG ++D SL +++ +C L ++ +S+C
Sbjct: 283 HCVSEVSGSFLKYIKGLKH-----LKTIWIDG-AHVSDSSLVSLSSSCRSLMEIGLSRCV 336
Query: 230 -ISDSGLMVLARSNQLNLQIFSVAGCSMISDKSLPAIVKMGHTLLGLNIQHCNAIS 284
++D G++ LAR N LNL+ ++A C ++D ++ A+ + L L ++ C+ I+
Sbjct: 337 DVTDIGMISLAR-NCLNLKTLNLACCGFVTDVAISAVAQSCRNLGTLKLESCHLIT 391
>AT2G06040.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 10 growth stages; CONTAINS
InterPro DOMAIN/s: Leucine-rich repeat,
cysteine-containing subtype (InterPro:IPR006553); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G21900.1); Has 3642 Blast hits to 1885 proteins
in 175 species: Archae - 0; Bacteria - 109; Metazoa -
2066; Fungi - 492; Plants - 697; Viruses - 0; Other
Eukaryotes - 278 (source: NCBI BLink). |
chr2:2352333-2355419 REVERSE
Length = 762
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 5/201 (2%)
Query: 60 LEVLQLEECHRIAQLGFFGSLLNSGSKLKALSLVNCMGIRELNLRLPQVPPCNSLRSLSI 119
L L + EC I + + L KL+ LSL + ++ L+ +L+ L +
Sbjct: 538 LRELYINECQNI-DMKHILAALKKFEKLEVLSLADLPSVKGRFLKEFVTARGQTLKQLIL 596
Query: 120 RNCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVN-L 178
N D + ++ + CP L L+L+ + +TD+ L C+A L K L C N
Sbjct: 597 TNSRKLSDSSIKVISENCPNLSVLDLANVCKLTDSSLGYLANGCQA-LEK--LIFCRNPF 653
Query: 179 TDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKCAISDSGLMVL 238
+D+ V+A E G +L+ L+L+ K+ + A+A++ L LD+S C + L+
Sbjct: 654 SDEAVAAFVETAGGSLKELSLNNVKKVGHNTALALAKHSDKLQILDISWCREMSNDLLGY 713
Query: 239 ARSNQLNLQIFSVAGCSMISD 259
N +L++ V GCS ++D
Sbjct: 714 IVDNSSSLKVLKVFGCSQVTD 734
>AT1G55590.1 | Symbols: | F-box family protein |
chr1:20769476-20771756 REVERSE
Length = 607
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 45/217 (20%)
Query: 111 CNSLRSLS-IRNC-------PGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLEN 162
C L SLS +R C D G+ LL + C L+++ L G V+DAGF LL +
Sbjct: 276 CQQLTSLSLVRTCYNRKISFKRINDMGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHS 335
Query: 163 CE-------------------------AGLVKVNLSGCVNLTDKVVSALTEQHGW--TLE 195
C L +V LS C +T + V L G LE
Sbjct: 336 CRNLKKFEVRGAFLLSDLAFHDVTGSSCSLQEVRLSTCPLITSEAVKKL----GLCGNLE 391
Query: 196 VLNLDGCGKITDESLTAIAENCLMLSDLDVSKCAISDSGLMVLARSNQLNLQIFSVAGCS 255
VL+L C I+D L +++ L+ L+++ ++DSG++ L +S+ + + S+ GC
Sbjct: 392 VLDLGSCKSISDSCLNSVSA-LRKLTSLNLAGADVTDSGMLALGKSD-VPITQLSLRGCR 449
Query: 256 MISDKSLPAIVK----MGHTLLGLNIQHCNAISSSTV 288
+SD+ + ++ + TL L++ H IS +
Sbjct: 450 RVSDRGISYLLNNEGTISKTLSTLDLGHMPGISDRAI 486
>AT3G07550.2 | Symbols: | F-box family protein (FBL12) |
chr3:2409946-2411133 FORWARD
Length = 395
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 167 LVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSDLDVS 226
L ++LSGC L D + +L G L L LD C I+D+ ++ IA C LS + +
Sbjct: 93 LEHLSLSGCTVLNDSSLDSL-RYPGARLHTLYLDCCFGISDDGISTIASFCPNLSVVSLY 151
Query: 227 KCAISDSGLMVLARSNQLNLQIFSVAGCSMISDKSLPAIVKMGHTLLGLNIQHCNAIS 284
+C ISD GL LAR++ L+L+ +++ C ++SD + A+ + L + I +C +I+
Sbjct: 152 RCNISDIGLETLARAS-LSLKCVNLSYCPLVSDFGIKALSQACLQLESVKISNCKSIT 208
>AT3G07550.1 | Symbols: | F-box family protein (FBL12) |
chr3:2409946-2411133 FORWARD
Length = 395
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 167 LVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSDLDVS 226
L ++LSGC L D + +L G L L LD C I+D+ ++ IA C LS + +
Sbjct: 93 LEHLSLSGCTVLNDSSLDSL-RYPGARLHTLYLDCCFGISDDGISTIASFCPNLSVVSLY 151
Query: 227 KCAISDSGLMVLARSNQLNLQIFSVAGCSMISDKSLPAIVKMGHTLLGLNIQHCNAIS 284
+C ISD GL LAR++ L+L+ +++ C ++SD + A+ + L + I +C +I+
Sbjct: 152 RCNISDIGLETLARAS-LSLKCVNLSYCPLVSDFGIKALSQACLQLESVKISNCKSIT 208
>AT1G21410.1 | Symbols: SKP2A | SKP2A | chr1:7497479-7499386 FORWARD
Length = 360
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 50/234 (21%)
Query: 102 NLRLPQVPPCNSLRSLSIR-NCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLL 160
+L L VP L++L++R + P D + + C +LQ L+LS +TD L
Sbjct: 80 SLVLSLVPKFVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITDRSLYALA 139
Query: 161 ENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGC------------------ 202
C L K+NLSGC + +D ++ LT + L+VLNL GC
Sbjct: 140 HGC-PDLTKLNLSGCTSFSDTAIAYLT-RFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQ 197
Query: 203 ---------GKITDESLTAIAENCLMLSDLDVSKCA-ISDSGLMVLARSNQLNLQIFSVA 252
I+D+ + ++A C L LD+ C I+D ++ LA ++L+ +
Sbjct: 198 MQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALA-DWCVHLRSLGLY 256
Query: 253 GCSMISDKSLPAIVKMG------------------HTLLGLNIQHCNAISSSTV 288
C I+D+++ ++ + G L LNI C A++ S V
Sbjct: 257 YCRNITDRAMYSLAQSGVKNKPGSWKSVKKGKYDEEGLRSLNISQCTALTPSAV 310
>AT2G17020.1 | Symbols: | F-box family protein (FBL10) |
chr2:7396559-7398787 REVERSE
Length = 656
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 92/231 (39%), Gaps = 56/231 (24%)
Query: 65 LEECHRIAQLGFFG-SLLNSGSKLKALSLVNCMGIRELNLRLPQVPPCNSLRSLSIRNCP 123
LE+ +++ L FG +N KLK LSL+ R + P R
Sbjct: 271 LEDPRQVSDLTDFGLHEINQNGKLKHLSLI----------RSQEFHPTYFRR-------- 312
Query: 124 GFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLENCEA------------------ 165
D G+ L C ++ + L G VTDAGF +L +C +
Sbjct: 313 -VSDQGMLFLADKCLGMETICLGGFCRVTDAGFKTILHSCASLSKFSIYHGPKLTDLVFH 371
Query: 166 -------GLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAE--- 215
L V+L C LTD + L LE L+L GC + DE+LTA++
Sbjct: 372 DILATTLSLSHVSLRRCHLLTDHAIQKLAS--SLKLENLDLRGCRNLRDETLTAVSHLPK 429
Query: 216 -NCLMLSDLDVSKCAISDSGLMVLARSNQLNLQIFSVAGCSMISDKSLPAI 265
L+L D ISD+GL L +L SV GC ++DK + +
Sbjct: 430 LKVLLLDGAD-----ISDTGLSYLKEGVLDSLVSLSVRGCRNLTDKFMSTL 475
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 7/229 (3%)
Query: 16 MRGVTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAAQSLEVLQLEECHRIAQLG 75
R V+D G+ + T G G + + + SL + ++ L
Sbjct: 310 FRRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKTILHSCASLSKFSIYHGPKLTDL- 368
Query: 76 FFGSLLNSGSKLKALSLVNCMGIRELNLRLPQVPPCNSLRSLSIRNCPGFGDGGLALLGK 135
F +L + L +SL C + + ++ ++ L +L +R C D L +
Sbjct: 369 VFHDILATTLSLSHVSLRRCHLLTDHAIQ--KLASSLKLENLDLRGCRNLRDETLTAVSH 426
Query: 136 LCPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTE-QHGWTL 194
L P+L+ L L G ++D G L E LV +++ GC NLTDK +S L + L
Sbjct: 427 L-PKLKVLLLDGA-DISDTGLSYLKEGVLDSLVSLSVRGCRNLTDKFMSTLFDGSSKLAL 484
Query: 195 EVLNLDGCGKITDESLTAIAENCLMLSDLDVSKCA-ISDSGLMVLARSN 242
L+L +TD ++ A+A++ ++ L + +C I D+ +M LA +
Sbjct: 485 RELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASVMALASTR 533
>AT3G50080.1 | Symbols: VFB2 | VFB2 (VIER F-BOX PROTEINE 2);
ubiquitin-protein ligase | chr3:18572788-18574356
FORWARD
Length = 522
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 120/271 (44%), Gaps = 53/271 (19%)
Query: 17 RGVTDAGIEAMGRVAQT*GTFAFGNAYSYPTMGLVSFVKAAQSLEVLQLEECHRIAQLG- 75
R +TD G+E+ R ++ + G+ ++ G+ + ++ + LE L L+ + +L
Sbjct: 142 REITDLGMESFARNCKSLRKLSCGSC-TFGAKGINAMLEHCKVLEELSLKRIRGLHELAE 200
Query: 76 ----------------------FFGSLLNSGSKLKALSLVNCMG----IRELN------- 102
FGSL+ + + LK + ++ C+G + E+N
Sbjct: 201 PIKLSLSASLRSVFLKELVNGQVFGSLVATRT-LKKVKIIRCLGNWDRVFEMNGNGNSSL 259
Query: 103 --LRLPQ----------VPPCNSLRSLSIRNCPGFGDGGLALLGKLCPQLQNLELSG--L 148
+RL + + C++L +L I P + GLA + + C L+ L + G +
Sbjct: 260 TEIRLERLQVTDIGLFGISKCSNLETLHIVKTPDCSNLGLASVVERCKLLRKLHIDGWRV 319
Query: 149 HGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDE 208
+ D G + + ++C L ++ L G V+ T +SA+ + LE L L G G I D
Sbjct: 320 KRIGDQGLMSVAKHC-LNLQELVLIG-VDATYMSLSAIA-SNCKKLERLALCGSGTIGDA 376
Query: 209 SLTAIAENCLMLSDLDVSKCAISDSGLMVLA 239
+ IAE C+ L + C ISD G+ LA
Sbjct: 377 EIGCIAEKCVTLRKFCIKGCLISDVGVQALA 407
>AT5G21900.1 | Symbols: | unknown protein | chr5:7238239-7240338
FORWARD
Length = 544
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 4/224 (1%)
Query: 55 KAAQSLEVLQLEECHRIAQLGFFGSLLNSGSKLKALSLVNCMGIRELNLRLPQVPPCNSL 114
K +L L + C I + F S L KL LS+ + + + +R + + L
Sbjct: 305 KFGSTLRGLSIGGCQGIKKHKGFSSSLYKFEKLNYLSVAGLVSVNDGVVRSFFMFRSSIL 364
Query: 115 RSLSIRNCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSG 174
LS+ NC D + +G+ C +L+ L+++ L +TD + E C L + L+
Sbjct: 365 TDLSLANCNEVTDECMWHIGRYCKKLEALDITDLDKLTDKSLEFITEGCRY-LKSLKLTS 423
Query: 175 CVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKC-AISDS 233
+D+ ++A E G +L L L+ + E+ ++A+ C ML LD+S C + +
Sbjct: 424 N-RFSDECIAAFLEVSGGSLRELCLNKVRDVGPETAFSLAKVCKMLQFLDLSWCRRLKED 482
Query: 234 GLMVLARSNQLNLQIFSVAGCSMISDKSLPAIVKMGHTLLGLNI 277
L + R +LQ + G + + D L + + + GL +
Sbjct: 483 DLRRILRCCS-SLQSLKLFGWTQVEDTYLEELSRSDVHITGLKL 525
>AT1G47056.1 | Symbols: VFB1 | VFB1 (VIER F-BOX PROTEINE 1);
ubiquitin-protein ligase | chr1:17276103-17277659
REVERSE
Length = 518
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 31/209 (14%)
Query: 56 AAQSLEVLQLEECHRIAQLGFFGSLLNSGSKLKALSLVNC---------------MGIRE 100
AA SL+ + L+E + Q FG ++ LK+L L C G+ E
Sbjct: 207 AASSLKSICLKELYN-GQC--FGPVIVGAKNLKSLKLFRCSGDWDLLLQEMSGKDHGVVE 263
Query: 101 LNLRLPQVPP--------CNSLRSLSIRNCPGFGDGGLALLGKLCPQLQNLELSGLHG-- 150
++L QV C+SL SL + P + GLA + + C +L+ L + G
Sbjct: 264 IHLERMQVSDVALSAISYCSSLESLHLVKTPECTNFGLAAIAEKCKRLRKLHIDGWKANL 323
Query: 151 VTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESL 210
+ D G + + + C + L ++ L G VN T + L + LE L L GC D L
Sbjct: 324 IGDEGLVAVAKFC-SQLQELVLIG-VNPTTLSLGMLAAK-CLNLERLALCGCDTFGDPEL 380
Query: 211 TAIAENCLMLSDLDVSKCAISDSGLMVLA 239
+ IA C L L + C ISD G+ LA
Sbjct: 381 SCIAAKCPALRKLCIKNCPISDVGIENLA 409
>AT4G07400.1 | Symbols: VFB3 | VFB3 (VIER F-BOX PROTEINE 3);
ubiquitin-protein ligase | chr4:4197847-4199511 REVERSE
Length = 554
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 106/264 (40%), Gaps = 58/264 (21%)
Query: 56 AAQSLEVLQLEECHRIAQLGFFGSLLNSGSKLKALSLVNCMG------------------ 97
AA SL+V+ L+E H Q F LL+ L+ L + C G
Sbjct: 240 AAGSLKVICLKELHN-GQC--FAPLLSGAKGLRILKIFRCSGDWDRVFEAVRDKVNAIVE 296
Query: 98 -----IRELNLRLPQVPPCNSLRSLSIRNCPGFGDGGLALLGKLCPQLQNLELSG--LHG 150
I+ +L L + C+ + L + P + GLAL+ + C L+ L + G +
Sbjct: 297 IHLERIQMSDLGLTALSKCSGVEVLHLVKTPDCTNVGLALVAERCKLLRKLHIDGWKTNR 356
Query: 151 VTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESL 210
+ D G I + + C L ++ L G VN T + A+ + LE L L G + D L
Sbjct: 357 IGDEGLIVVAKYC-WNLQELVLIG-VNPTKLSLEAIV-SNCLNLERLALCGSDTVGDTEL 413
Query: 211 TAIAENCLMLSDLDVSKCAISDSGLMVLARSNQLNLQIFSVAGCSMISDKSLPAIVKMGH 270
IAE CL L L + C I+D G+ L GC
Sbjct: 414 CCIAEKCLALRKLCIKNCPITDDGIKALGN------------GCP--------------- 446
Query: 271 TLLGLNIQHCNAISSSTVDLLVER 294
LL + ++ C +++ DLL +R
Sbjct: 447 NLLKVKVKKCRGVTTQGADLLRKR 470
>AT1G80570.2 | Symbols: | F-box family protein (FBL14) |
chr1:30290661-30292231 FORWARD
Length = 480
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 28/190 (14%)
Query: 51 VSFVKAAQSLEVLQLEECHRIAQLGFFGSLLNSGSKLKALSLVNCMGIRELNL------- 103
+ + ++LE L ++ C I + G L NS KL +L R + +
Sbjct: 180 LEYFGKLETLEELCIKNCRAIGE-GDLIKLRNSWRKLTSLQFEVDANYRYMKVYDQLDVE 238
Query: 104 RLP-QVPPCNSLRSLSIRNCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLEN 162
R P Q+ PC+SL LS+ NC GLA + + C L+ L L GV+D+ I L++
Sbjct: 239 RWPKQLVPCDSLVELSLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQK 298
Query: 163 CEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSD 222
S +++ +V S +TL +LN + ++TDESL+AIA++C S
Sbjct: 299 A---------SHLRSISLRVPS------DFTLPLLN-NITLRLTDESLSAIAQHC---SK 339
Query: 223 LDVSKCAISD 232
L+ K + SD
Sbjct: 340 LESFKISFSD 349
>AT1G80570.1 | Symbols: | F-box family protein (FBL14) |
chr1:30290828-30292231 FORWARD
Length = 467
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 51 VSFVKAAQSLEVLQLEECHRIAQLGFFGSLLNSGSKLKALSLVNCMGIRELNL------- 103
+ + ++LE L ++ C I + G L NS KL +L R + +
Sbjct: 167 LEYFGKLETLEELCIKNCRAIGE-GDLIKLRNSWRKLTSLQFEVDANYRYMKVYDQLDVE 225
Query: 104 RLP-QVPPCNSLRSLSIRNCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLEN 162
R P Q+ PC+SL LS+ NC GLA + + C L+ L L GV+D+ I L++
Sbjct: 226 RWPKQLVPCDSLVELSLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQK 285
Query: 163 CEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSD 222
S +++ +V S +TL +LN + ++TDESL+AIA++C L
Sbjct: 286 A---------SHLRSISLRVPS------DFTLPLLN-NITLRLTDESLSAIAQHCSKLES 329
Query: 223 LDVS 226
+S
Sbjct: 330 FKIS 333
>AT1G80570.3 | Symbols: | F-box family protein (FBL14) |
chr1:30290828-30292231 FORWARD
Length = 467
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 51 VSFVKAAQSLEVLQLEECHRIAQLGFFGSLLNSGSKLKALSLVNCMGIRELNL------- 103
+ + ++LE L ++ C I + G L NS KL +L R + +
Sbjct: 167 LEYFGKLETLEELCIKNCRAIGE-GDLIKLRNSWRKLTSLQFEVDANYRYMKVYDQLDVE 225
Query: 104 RLP-QVPPCNSLRSLSIRNCPGFGDGGLALLGKLCPQLQNLELSGLHGVTDAGFIPLLEN 162
R P Q+ PC+SL LS+ NC GLA + + C L+ L L GV+D+ I L++
Sbjct: 226 RWPKQLVPCDSLVELSLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQK 285
Query: 163 CEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSD 222
S +++ +V S +TL +LN + ++TDESL+AIA++C L
Sbjct: 286 A---------SHLRSISLRVPS------DFTLPLLN-NITLRLTDESLSAIAQHCSKLES 329
Query: 223 LDVS 226
+S
Sbjct: 330 FKIS 333
>AT5G67250.1 | Symbols: SKIP2, VFB4 | SKIP2 (SKP1/ASK1 INTERACTING
PROTEIN 2); ubiquitin-protein ligase |
chr5:26831677-26833260 REVERSE
Length = 527
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 107/273 (39%), Gaps = 53/273 (19%)
Query: 17 RGVTDAGIEAMGRVAQT*GTFAFG--NAYSYPTMGLVSFVKAAQSLEVLQLEECHRIAQL 74
R +TD G+E + + + G N + ++ K + L V +L H A+L
Sbjct: 144 REITDLGMEDFAKNCKNLKKLSVGSCNFGAKGVNAMLEHCKLLEELSVKRLRGIHEAAEL 203
Query: 75 -----------------------GFFGSLLNSGSKLKALSLVNCMG-------------- 97
F LL + LK L ++ C+G
Sbjct: 204 IHLPDDASSSSLRSICLKELVNGQVFEPLLATTRTLKTLKIIRCLGDWDKVLQMIANGKS 263
Query: 98 -IRELNLRLPQVP--------PCNSLRSLSIRNCPGFGDGGLALLGKLCPQLQNLELSG- 147
+ E++L QV C+++ +L I P + GL + + C L+ L + G
Sbjct: 264 SLSEIHLERLQVSDIGLSAISKCSNVETLHIVKTPECSNFGLIYVAERCKLLRKLHIDGW 323
Query: 148 -LHGVTDAGFIPLLENCEAGLVKVNLSGCVNLTDKVVSALTEQHGWTLEVLNLDGCGKIT 206
+ + D G + + ++C L ++ L G VN T ++A+ + LE L L G G I
Sbjct: 324 RTNRIGDEGLLSVAKHC-LNLQELVLIG-VNATHMSLAAIA-SNCEKLERLALCGSGTIG 380
Query: 207 DESLTAIAENCLMLSDLDVSKCAISDSGLMVLA 239
D + IA C L + C +SD G+ LA
Sbjct: 381 DTEIACIARKCGALRKFCIKGCPVSDRGIEALA 413
>AT4G33210.1 | Symbols: | F-box family protein (FBL15) |
chr4:16015971-16020697 REVERSE
Length = 942
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 110/258 (42%), Gaps = 65/258 (25%)
Query: 41 NAYSYPTMGLVSFVKAAQSLEVLQ----------------LEECHRIAQLGFFGSLLNSG 84
N Y P + ++ +KAA +L L+ L EC+ + + ++L +G
Sbjct: 259 NVYGAPAVNALA-MKAATTLRNLEVLTIGKGHISESFFQALGECNMLRSVTVSDAILGNG 317
Query: 85 S--------KLKALSLVNCMGIRELNLRLPQVPPCNSLRSLSIR---------NCPGFGD 127
+ +L+ L + C +R L++R PQ LRSLS++ NCP
Sbjct: 318 AQEIHLSHDRLRELKITKCRVMR-LSIRCPQ------LRSLSLKRSNMSQAMLNCPLLQL 370
Query: 128 GGLALLGKL-----------CPQLQNLELSGLHGVTDAGFIPLLENCEAGLVKVNLSGCV 176
+A KL CPQL++L++S V+D + + C A L +N S C
Sbjct: 371 LDIASCHKLLDAAIRSAAISCPQLESLDVSNCSCVSDETLREIAQAC-ANLHILNASYCP 429
Query: 177 NLTDKVVSALTEQHGWTLEVLNLDGCGKITDESLTAIAENCLMLSDLDVSKCAISDSGLM 236
N++ L H L VL L C IT S+T IA N L L++ C + + +
Sbjct: 430 NIS------LESVHLPMLTVLKLHSCEGITSASMTWIA-NSPALEVLELDNCNLLTTVSL 482
Query: 237 VLARSNQLNLQIFSVAGC 254
L+R LQ S+ C
Sbjct: 483 HLSR-----LQSISLVHC 495