Jatropha Genome Database

JcCB0151651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0151651.10 + phase: 1 /pseudo/partial
         (168 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48655.3 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    62   2e-10
AT5G48655.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    62   2e-10
AT5G48655.2 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    62   2e-10
AT3G07200.2 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    50   8e-07
AT3G07200.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    50   8e-07

>AT5G48655.3 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr5:19731575-19732486 REVERSE
          Length = 203

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 26  AIAHEIMTQRNHTQRTCGNAVVVDVDSGRTTRLTYXXXXXXXXXXXXHAVINCEHY-VNL 84
           A A      RN  +R     ++VDV+SG TTR                +VI+CEH  VN 
Sbjct: 68  AFAEAKSKSRNARRR----PLMVDVESGGTTRFPANISNKRRRIPSSESVIDCEHASVND 123

Query: 85  ESSGSSMRDNAQQLQXXXXXKEPTFNCPICMGPFVEETSTKCGHIFLXG 133
           E + SS    ++            F CPICM PF EE STKCGHIF  G
Sbjct: 124 EVNMSSRVSRSKAPAPPPEEP--KFTCPICMCPFTEEMSTKCGHIFCKG 170


>AT5G48655.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr5:19731575-19732486 REVERSE
          Length = 203

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 26  AIAHEIMTQRNHTQRTCGNAVVVDVDSGRTTRLTYXXXXXXXXXXXXHAVINCEHY-VNL 84
           A A      RN  +R     ++VDV+SG TTR                +VI+CEH  VN 
Sbjct: 68  AFAEAKSKSRNARRR----PLMVDVESGGTTRFPANISNKRRRIPSSESVIDCEHASVND 123

Query: 85  ESSGSSMRDNAQQLQXXXXXKEPTFNCPICMGPFVEETSTKCGHIFLXG 133
           E + SS    ++            F CPICM PF EE STKCGHIF  G
Sbjct: 124 EVNMSSRVSRSKAPAPPPEEP--KFTCPICMCPFTEEMSTKCGHIFCKG 170


>AT5G48655.2 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr5:19731575-19732486 REVERSE
          Length = 203

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 26  AIAHEIMTQRNHTQRTCGNAVVVDVDSGRTTRLTYXXXXXXXXXXXXHAVINCEHY-VNL 84
           A A      RN  +R     ++VDV+SG TTR                +VI+CEH  VN 
Sbjct: 68  AFAEAKSKSRNARRR----PLMVDVESGGTTRFPANISNKRRRIPSSESVIDCEHASVND 123

Query: 85  ESSGSSMRDNAQQLQXXXXXKEPTFNCPICMGPFVEETSTKCGHIFLXG 133
           E + SS    ++            F CPICM PF EE STKCGHIF  G
Sbjct: 124 EVNMSSRVSRSKAPAPPPEEP--KFTCPICMCPFTEEMSTKCGHIFCKG 170


>AT3G07200.2 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr3:2291343-2292223 FORWARD
          Length = 182

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 105 KEPTFNCPICMGPFVEETSTKCGHIF 130
           +EP F+CPIC+ PF +E STKCGHIF
Sbjct: 121 EEPKFSCPICLCPFTQEVSTKCGHIF 146


>AT3G07200.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr3:2291343-2292223 FORWARD
          Length = 182

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 105 KEPTFNCPICMGPFVEETSTKCGHIF 130
           +EP F+CPIC+ PF +E STKCGHIF
Sbjct: 121 EEPKFSCPICLCPFTQEVSTKCGHIF 146