Jatropha Genome Database

JcCB0151131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0151131.10 + phase: 0 /partial
         (127 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD    108   6e-25

>AT3G57570.1 | Symbols:  | binding | chr3:21312598-21320105 FORWARD
          Length = 1068

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 78/119 (65%), Gaps = 2/119 (1%)

Query: 2   LMPEWSKSVQDWNSMIGPLIDKMFAEPSNATIVRFLSYISEHLAEAADVVLHRVLLQMQS 61
           L+PEW++SVQ+WNS+IGPL+DKMF EPSNA +VRFLS ISE LA+ +D+VL  VL  M+ 
Sbjct: 611 LIPEWARSVQNWNSLIGPLLDKMFLEPSNAIMVRFLSCISESLADTSDLVLPHVLSHMKK 670

Query: 62  QKGIKKGLLSRWESKSCQNEDLMGMQQSLFEXXXXXXXXXXXXXXVFNDLNSFIMYGQL 120
           Q  +    +SR ++KS  + D    ++SLF+              VF+D++S  +YG+ 
Sbjct: 671 QNKVDASFISRSDTKS--SVDKTKSEKSLFDHLCPLLILRLLPQRVFDDIDSSTIYGKF 727