Jatropha Genome Database

JcCB0149161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0149161.10 + phase: 0 /pseudo/partial
         (226 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09710.1 | Symbols:  | DNA binding | chr1:3141119-3144232 FOR...   128   3e-30
AT1G58220.1 | Symbols:  | myb family transcription factor | chr1...   119   2e-27

>AT1G09710.1 | Symbols:  | DNA binding | chr1:3141119-3144232
           FORWARD
          Length = 610

 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 99/153 (64%), Gaps = 7/153 (4%)

Query: 76  DLEYELDVFPDVSTEASTEAAACVKVLIASGLPSDSTHPNSTTVEAPLTINIPNGKPCRF 135
           D+E EL+  P VS EAS EA A VKV+ AS + S+S   + +TVEAPLTINIP   P   
Sbjct: 95  DMECELEASPAVSHEASVEAIAHVKVMAASYVLSESDILDDSTVEAPLTINIPYALPEGS 154

Query: 136 TSENLQPAIMKGVNITVPVSVQKQPLPAVTSAEGLDANGSG--SGVPRRKRKPWSDSEDL 193
              +  P   +G+NI  PV +QK     VTS EG++ NGS   S   RRKRK WS  ED 
Sbjct: 155 QEPSESPWSSRGMNINFPVCLQK-----VTSTEGMNGNGSAGISMAFRRKRKRWSAEEDE 209

Query: 194 ELIAAVQKYGEGNWANILRSEVKWDRTASQLSQ 226
           EL AAV++ GEGNWA+I++ + + +RTASQLSQ
Sbjct: 210 ELFAAVKRCGEGNWAHIVKGDFRGERTASQLSQ 242


>AT1G58220.1 | Symbols:  | myb family transcription factor |
           chr1:21558388-21562669 REVERSE
          Length = 834

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 98/157 (62%), Gaps = 16/157 (10%)

Query: 75  CDLEYELDVFPDVSTEASTEAAACVKVLIASGLPSDSTHPNSTTVEAPLTINIPNGKPCR 134
            D+E EL+  P VS +  TEA A VKV+ AS +PS+S  P  +TVEAPLTINIP      
Sbjct: 92  SDMECELEASPGVSVDVVTEAVAHVKVMAASYVPSESDIPEDSTVEAPLTINIP----YS 147

Query: 135 FTSENLQPA----IMKGVNITVPVSVQKQPLPAVTSAEGLDANGSGSGV-PRRKRKPWSD 189
                 +P+      +G+NIT PV + K       +AEG + NG  S + PR++RK WS 
Sbjct: 148 LHRGPQEPSDSYWSSRGMNITFPVFLPK-------AAEGHNGNGLASSLAPRKRRKKWSA 200

Query: 190 SEDLELIAAVQKYGEGNWANILRSEVKWDRTASQLSQ 226
            ED ELIAAV+++GEG+WA I + E + +RTASQLSQ
Sbjct: 201 EEDEELIAAVKRHGEGSWALISKEEFEGERTASQLSQ 237