Jatropha Genome Database

JcCB0148821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0148821.10 - phase: 0 /partial
         (182 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04790.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...   172   1e-43
AT3G55530.1 | Symbols: SDIR1 | SDIR1 (SALT- AND DROUGHT-INDUCED ...    54   5e-08

>AT1G04790.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr1:1345469-1348143 FORWARD
          Length = 634

 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/185 (54%), Positives = 121/185 (65%), Gaps = 30/185 (16%)

Query: 1   RSSSTLHANRQPQPRS-----FHNPSNRR---VAQARVPATRTSQLRSRLFNRSPAALSR 52
           RSS+T+ AN  P+ RS         S+RR     QAR P             R+PA   R
Sbjct: 447 RSSNTIAAN--PRGRSRLEARLQQHSSRRRFNPPQARAPV------------RAPA---R 489

Query: 53  ARNPSL----ATLSTARNFQFPLGMDIDMRLDILEALEEFSDMSMTTSRILQVQRDFNEN 108
            R   L    A+L TA NF FP+ M +D R+DILE LE     S+T+S +L + RDF E+
Sbjct: 490 GRGYRLGGASASLRTALNFSFPIDMGLDSRMDILEELENAIGHSITSSNLLHMDRDFTED 549

Query: 109 DYEMLLALDENNHQRG-ASVNRINSLPESTVQTDNFEETCAICLETPTVGETIRHLPCLH 167
           DYE+LLALDENNH+ G AS NRIN+LPESTVQTDNF+ETC ICLETP +G+TIRHLPCLH
Sbjct: 550 DYELLLALDENNHRHGGASANRINNLPESTVQTDNFQETCVICLETPKIGDTIRHLPCLH 609

Query: 168 KFHKD 172
           KFHKD
Sbjct: 610 KFHKD 614


>AT3G55530.1 | Symbols: SDIR1 | SDIR1 (SALT- AND DROUGHT-INDUCED
           RING FINGER1); protein binding / ubiquitin-protein
           ligase/ zinc ion binding | chr3:20595300-20597188
           REVERSE
          Length = 273

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 35/104 (33%)

Query: 101 VQRDFNENDYEMLLALDENN-HQRGASVNRINSLP------------------------- 134
           + R+F++ DYE L ALD +N      S   IN+LP                         
Sbjct: 132 LDREFDDLDYETLRALDSDNVSTTSMSEEEINALPVHKYKVLDPENGCSLAKQASTSSSA 191

Query: 135 --------ESTVQTDNFEETCAICLETPTVGETIRHLPCLHKFH 170
                   ES   T++ E TC++CLE  TVGE +R LPCLH+FH
Sbjct: 192 EKMLDSANESKKGTED-ELTCSVCLEQVTVGEIVRTLPCLHQFH 234