Jatropha Genome Database
- JcCB0148531.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0148531.10 - phase: 2 /pseudo/partial
(171 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54680.1 | Symbols: ILR3 | ILR3 (iaa-leucine resistant3); DNA... 92 1e-19
AT3G23210.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 87 5e-18
AT4G14410.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 83 1e-16
AT4G14410.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 83 1e-16
AT1G51070.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 82 1e-16
AT3G19860.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 52 2e-07
AT3G19860.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 51 3e-07
>AT5G54680.1 | Symbols: ILR3 | ILR3 (iaa-leucine resistant3); DNA
binding / transcription factor | chr5:22217270-22218993
FORWARD
Length = 234
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 72/120 (60%), Gaps = 6/120 (5%)
Query: 2 CLDSSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIE 61
C SSA S +KACREK RRDRLN++FM+L +ILEPGN ++K AIL A ++ LR E
Sbjct: 67 CESSSATS-SKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGE 125
Query: 62 AKELKDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSSFAPQFSFYP 121
A++LKD N LQ+ I EK+++E +++++ APQ SF+P
Sbjct: 126 AQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMN-----APQPSFFP 180
>AT3G23210.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr3:8283255-8284915 REVERSE
Length = 320
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 5 SSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAKE 64
S ++ TKACREK+RR++LN++FMDL S+LEPG ++K AIL A ++N LR EA E
Sbjct: 160 SCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHE 219
Query: 65 LKDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPS-SFAP 115
L++ N+ L E I AEK++ME ++S+ +PS F P
Sbjct: 220 LQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGFMP 271
>AT4G14410.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:8300418-8301503 FORWARD
Length = 277
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 11 TKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAKELKDKNK 70
TKACRE++RR++LNERFMDL S+LEPG ++K AIL A +LN LR EA +L++ N+
Sbjct: 128 TKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQ 187
Query: 71 FLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSS-FAPQF 117
L E I A+K++ E ++S++ PSS F P
Sbjct: 188 KLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIPHI 235
>AT4G14410.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:8300077-8301503 FORWARD
Length = 283
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 11 TKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAKELKDKNK 70
TKACRE++RR++LNERFMDL S+LEPG ++K AIL A +LN LR EA +L++ N+
Sbjct: 134 TKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQ 193
Query: 71 FLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSS-FAPQF 117
L E I A+K++ E ++S++ PSS F P
Sbjct: 194 KLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIPHI 241
>AT1G51070.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:18928018-18929513 FORWARD
Length = 226
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 4 DSSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAK 63
+S S +KACREK RRDRLN++F +L S+LEPG ++KVAI+ A ++N R EA+
Sbjct: 63 ESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQ 122
Query: 64 ELKDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSSFAPQFSFYPXX 123
+LKD N LQE I EK+R++ ++ +I + PQ F P
Sbjct: 123 KLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLK--AIKTQPQPQPCFLPNP 180
Query: 124 XXXXXXXXPXIICQDLPLDLFGTLYIYIYIPLEA 157
P + +P + ++ ++P A
Sbjct: 181 QTLSQAQAP--GSKLVPFTTYPGFAMWQFMPPAA 212
>AT3G19860.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr3:6903842-6905863 FORWARD
Length = 337
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 2 CLDSSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIE 61
+D SAR KA REK+RR++LNE F++L ++L+P +N +K IL LL L E
Sbjct: 53 VMDVSARKSQKAGREKLRREKLNEHFVELGNVLDPERPKN-DKATILTDTVQLLKELTSE 111
Query: 62 AKELK 66
+LK
Sbjct: 112 VNKLK 116
>AT3G19860.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr3:6904579-6905863 FORWARD
Length = 284
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 3 LDSSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEA 62
+D SAR KA REK+RR++LNE F++L ++L+P +N +K IL LL L E
Sbjct: 1 MDVSARKSQKAGREKLRREKLNEHFVELGNVLDPERPKN-DKATILTDTVQLLKELTSEV 59
Query: 63 KELK 66
+LK
Sbjct: 60 NKLK 63