Jatropha Genome Database

JcCB0147481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0147481.10 + phase: 0 /partial
         (261 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01160.1 | Symbols:  | unknown protein | chr3:54655-57449 REV...   280   8e-76

>AT3G01160.1 | Symbols:  | unknown protein | chr3:54655-57449
           REVERSE
          Length = 713

 Score =  280 bits (715), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/268 (57%), Positives = 181/268 (67%), Gaps = 7/268 (2%)

Query: 1   AGDLYVVLSSFLPKRGAIKSVAVYPSEFGLERMKEEELHGPV----GLFXXXXXXXXXXX 56
           A DLYVVL+SFLPK G I SVAVYPSEFGLERMKEEE+HGPV                  
Sbjct: 214 AKDLYVVLNSFLPKDGRILSVAVYPSEFGLERMKEEEIHGPVIDGDKKNDASDDEDEEEE 273

Query: 57  XXXXXXXXXLRAYEKSRLRYFYAVVECDSIATAEHLYKACDGVEFERSSNVLDLRFVPDS 116
                    LRAYE SRL+Y++AV ECDS ATA++LYK+CDG+EFERSSN LDLRF+PDS
Sbjct: 274 EDEDVINQKLRAYEISRLKYYFAVAECDSSATADYLYKSCDGIEFERSSNKLDLRFIPDS 333

Query: 117 MEFKHPPRDIAEEAPTNYDGLDFHTKALQHSNIAISWDEDEPQRVKTLKRKFNADQLADL 176
           MEFKHPPRDIA EAP  Y+GLDF ++ALQ S + +SWDEDEP R+KTL +KFN +QLA+L
Sbjct: 334 MEFKHPPRDIASEAPAGYEGLDFQSRALQMSKVNLSWDEDEPHRIKTLNQKFNPEQLANL 393

Query: 177 ELKEFLAXXXXXXXXXXX-XXVAEGEVDKKIKKRDKYRALIXXXXXXXXX--XXXXXXXM 233
           E+KEFLA                  +  KK KK+DKYRALI                  M
Sbjct: 394 EMKEFLASDESDSDEEDDLGNEVINQSKKKDKKKDKYRALIEAEDVDSDKDLEEENDQDM 453

Query: 234 EITFHTGLEGLSKRLLERKDKKSESVWE 261
           E+TF+TGLE LSK +L++KD +SESVWE
Sbjct: 454 EVTFNTGLEDLSKEILKKKDNQSESVWE 481