Jatropha Genome Database

JcCB0147231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0147231.10 + phase: 1 /partial
         (274 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52110.2 | Symbols: HCF208 | HCF208 (HIGH CHLOROPHYLL FLUORES...   303   6e-83
AT5G52110.1 | Symbols: HCF208, CCB2 | HCF208 (HIGH CHLOROPHYLL F...   303   6e-83

>AT5G52110.2 | Symbols: HCF208 | HCF208 (HIGH CHLOROPHYLL
           FLUORESCENCE 208) | chr5:21172159-21173953 REVERSE
          Length = 275

 Score =  303 bits (777), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 157/266 (59%), Positives = 196/266 (73%), Gaps = 9/266 (3%)

Query: 12  LIQLNIRPKF--RAKVTRKSLVIASRIDNSQTRENQQQELNLSILRFTFGIPGLDESYLP 69
           +      PKF  + +  R + + A   ++S   +   Q+LNLS+LRFTFGIPG DESYLP
Sbjct: 5   ICNFPFHPKFALQPRAQRSTRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDESYLP 64

Query: 70  RWIGYGFGSLLLLNHFLGSNSAASPPQLRTEALGISLAAFSIALPFFGRFLKGVRPMDQA 129
           RWIGYGFGSLLLLNHF  S +  S  Q+R+EALG+SLAAFSIALP+ G+FLKG   ++Q 
Sbjct: 65  RWIGYGFGSLLLLNHFSAS-APISESQMRSEALGLSLAAFSIALPYIGKFLKG-SVVEQR 122

Query: 130 ALPGGAEQIFLMSENIFDTQKEDLAWATYVLLRNTNTIAVLISIQGGLCVRGYWKTPDNL 189
           +LP   EQ+F++S NI D+ KEDLAWATYVLLRNT+TIAVLIS+QG LCVRGYW  PD +
Sbjct: 123 SLPEEGEQVFVISSNIGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNCPDQM 182

Query: 190 SKAQLLDWFLKQIDSIGLFDLRDTLYFPQTAESGL-WEMLPKGTRSLLVEPVHQARAKSA 248
           SKAQL DWF K++D IGL D+++TLYFPQ A S L  ++LP GTRSL V+P+ Q    + 
Sbjct: 183 SKAQLHDWFKKKVDEIGLADVKETLYFPQYAGSALSLDILPDGTRSLFVQPLVQ----NT 238

Query: 249 NEMGKNEGFVLLASSMEYAYGDKDRA 274
           NE  K  GF+L+AS+  YAY DKDRA
Sbjct: 239 NEPQKVNGFLLVASTAGYAYSDKDRA 264


>AT5G52110.1 | Symbols: HCF208, CCB2 | HCF208 (HIGH CHLOROPHYLL
           FLUORESCENCE 208) | chr5:21172653-21173953 REVERSE
          Length = 275

 Score =  303 bits (777), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 157/266 (59%), Positives = 196/266 (73%), Gaps = 9/266 (3%)

Query: 12  LIQLNIRPKF--RAKVTRKSLVIASRIDNSQTRENQQQELNLSILRFTFGIPGLDESYLP 69
           +      PKF  + +  R + + A   ++S   +   Q+LNLS+LRFTFGIPG DESYLP
Sbjct: 5   ICNFPFHPKFALQPRAQRSTRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDESYLP 64

Query: 70  RWIGYGFGSLLLLNHFLGSNSAASPPQLRTEALGISLAAFSIALPFFGRFLKGVRPMDQA 129
           RWIGYGFGSLLLLNHF  S +  S  Q+R+EALG+SLAAFSIALP+ G+FLKG   ++Q 
Sbjct: 65  RWIGYGFGSLLLLNHFSAS-APISESQMRSEALGLSLAAFSIALPYIGKFLKG-SVVEQR 122

Query: 130 ALPGGAEQIFLMSENIFDTQKEDLAWATYVLLRNTNTIAVLISIQGGLCVRGYWKTPDNL 189
           +LP   EQ+F++S NI D+ KEDLAWATYVLLRNT+TIAVLIS+QG LCVRGYW  PD +
Sbjct: 123 SLPEEGEQVFVISSNIGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNCPDQM 182

Query: 190 SKAQLLDWFLKQIDSIGLFDLRDTLYFPQTAESGL-WEMLPKGTRSLLVEPVHQARAKSA 248
           SKAQL DWF K++D IGL D+++TLYFPQ A S L  ++LP GTRSL V+P+ Q    + 
Sbjct: 183 SKAQLHDWFKKKVDEIGLADVKETLYFPQYAGSALSLDILPDGTRSLFVQPLVQ----NT 238

Query: 249 NEMGKNEGFVLLASSMEYAYGDKDRA 274
           NE  K  GF+L+AS+  YAY DKDRA
Sbjct: 239 NEPQKVNGFLLVASTAGYAYSDKDRA 264