Jatropha Genome Database

JcCB0143751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143751.20 + phase: 0 
         (135 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18460.2 | Symbols: LCV3 | LCV3 (like cov 3) | chr2:8001320-8...   112   6e-26
AT2G20120.1 | Symbols: COV1 | COV1 (CONTINUOUS VASCULAR RING) | ...   111   2e-25
AT2G20130.1 | Symbols: LCV1 | LCV1 (LIKE COV 1) | chr2:8690614-8...   109   6e-25
AT2G18460.1 | Symbols: LCV3 | LCV3 (like cov 3) | chr2:8001638-8...   106   4e-24
AT1G43130.1 | Symbols: LCV2 | LCV2 (LIKE COV 2) | chr1:16228661-...    83   5e-17

>AT2G18460.2 | Symbols: LCV3 | LCV3 (like cov 3) |
           chr2:8001320-8002810 FORWARD
          Length = 251

 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 69/103 (66%), Gaps = 5/103 (4%)

Query: 1   MATRDMEMEGDRELLIPVAEIPENAKSKTXXXXXXXXXXXXHRLSGVEALSKVIRSWASK 60
           M TR    E D E LIP+ +   + +               H ++G EA+ KVIRSWASK
Sbjct: 1   METR----ERDLERLIPMHKSGASPRDVVLSVPPSPLASPIH-VAGKEAIYKVIRSWASK 55

Query: 61  KFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           KFMTGCVILLPIAVTFY TW F+HFVDGFFSP+Y HLGIN+FG
Sbjct: 56  KFMTGCVILLPIAVTFYFTWWFIHFVDGFFSPIYTHLGINMFG 98


>AT2G20120.1 | Symbols: COV1 | COV1 (CONTINUOUS VASCULAR RING) |
           chr2:8687568-8689321 REVERSE
          Length = 268

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 1   MATRDMEMEGDRELLIPVAEIPENAKSKTXXXXXXXXXXXXHRLSGVEALSKVIRSWASK 60
           MA R    E DRELLIPVA+  +     +               S  E LS  IR WASK
Sbjct: 10  MANR----ERDRELLIPVADSGDKDDGSSSKPSSSSSASSSSHQSSHETLSLFIRGWASK 65

Query: 61  KFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           KFMTGCVILLPIA+TFY+TW F+HFVDGFFSP+Y  LGIN+FG
Sbjct: 66  KFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINVFG 108


>AT2G20130.1 | Symbols: LCV1 | LCV1 (LIKE COV 1) |
           chr2:8690614-8692234 REVERSE
          Length = 256

 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 66/103 (64%), Gaps = 5/103 (4%)

Query: 1   MATRDMEMEGDRELLIPVAEIPENAKSKTXXXXXXXXXXXXHRLSGVEALSKVIRSWASK 60
           MA R    E DRELLIPVA+  +     +               SG E LS  IR WASK
Sbjct: 1   MANR----ERDRELLIPVADFGDK-DDGSSSKPSSSSSASSSHQSGHETLSLFIRGWASK 55

Query: 61  KFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           KFMTGCVILLPIAVTFY TW F+HFVDGFFSP+Y  LGINIFG
Sbjct: 56  KFMTGCVILLPIAVTFYTTWWFIHFVDGFFSPIYALLGINIFG 98


>AT2G18460.1 | Symbols: LCV3 | LCV3 (like cov 3) |
           chr2:8001638-8002854 FORWARD
          Length = 213

 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 47/56 (83%), Positives = 52/56 (92%)

Query: 48  EALSKVIRSWASKKFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           +A+ KVIRSWASKKFMTGCVILLPIAVTFY TW F+HFVDGFFSP+Y HLGIN+FG
Sbjct: 4   QAIYKVIRSWASKKFMTGCVILLPIAVTFYFTWWFIHFVDGFFSPIYTHLGINMFG 59


>AT1G43130.1 | Symbols: LCV2 | LCV2 (LIKE COV 2) |
           chr1:16228661-16231158 REVERSE
          Length = 261

 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 46/56 (82%)

Query: 48  EALSKVIRSWASKKFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           +A   V++SW SKKFMTG V+L P+AVTF +TW F+ FVDGFFSP+Y +LG++IFG
Sbjct: 39  KACYGVLQSWVSKKFMTGFVVLFPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFG 94