Jatropha Genome Database

JcCB0143731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143731.10 + phase: 0 /pseudo
         (271 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39290.1 | Symbols: PGPS1, PGP1, PGS1 | PGP1 (PHOSPHATIDYLGLY...   143   1e-34
AT3G55030.1 | Symbols: PGPS2 | PGPS2 (phosphatidylglycerolphosph...   139   2e-33
AT4G04870.1 | Symbols: CLS | CLS (CARDIOLIPIN SYNTHASE); cardiol...    60   1e-09

>AT2G39290.1 | Symbols: PGPS1, PGP1, PGS1 | PGP1
           (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1); CDP-alcohol
           phosphatidyltransferase/
           CDP-diacylglycerol-glycerol-3-phosphate
           3-phosphatidyltransferase | chr2:16407274-16408840
           FORWARD
          Length = 296

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 86/108 (79%), Gaps = 14/108 (12%)

Query: 153 QPPPSSQNH---HKQEDS-----------RSKLLTLPTILTLGRVAAVPLLVSTFYLDSW 198
           +P  SS+N    H Q DS            SK+LTLPT+LTLGRVAAVPLLV+TFY+DSW
Sbjct: 72  RPTSSSRNSFSGHGQLDSDDNSSPPPSQSSSKVLTLPTVLTLGRVAAVPLLVATFYVDSW 131

Query: 199 WGRTATTSIFIAAAVTDWLDGYLARKMRLGSAFGAFLDPVADKVCVSS 246
           WG TATTSIFIAAA+TDWLDGYLARKMRLGSAFGAFLDPVADK+ V++
Sbjct: 132 WGTTATTSIFIAAAITDWLDGYLARKMRLGSAFGAFLDPVADKLMVAA 179


>AT3G55030.1 | Symbols: PGPS2 | PGPS2 (phosphatidylglycerolphosphate
           synthase 2); CDP-alcohol phosphatidyltransferase/
           CDP-diacylglycerol-glycerol-3-phosphate
           3-phosphatidyltransferase | chr3:20396860-20398224
           FORWARD
          Length = 233

 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 88/122 (72%), Gaps = 12/122 (9%)

Query: 130 MGSDDKVEDVDWYQNHHLNGPNKQPPPSSQNHHKQ-----EDSRSKLLTLPTILTLGRVA 184
           MG +D    VD  QN    G +       +N H           SK++TLPT+LTLGRVA
Sbjct: 1   MGEEDT-ATVD--QNSFGGGKDSL----LRNRHSSPLPSPTQLSSKVITLPTVLTLGRVA 53

Query: 185 AVPLLVSTFYLDSWWGRTATTSIFIAAAVTDWLDGYLARKMRLGSAFGAFLDPVADKVCV 244
           AVP+LV+TFY+D WWGRTATTSIFIAAA+TDWLDGY+ARKMRLGS FGAFLDPVADK+ V
Sbjct: 54  AVPILVATFYVDCWWGRTATTSIFIAAAITDWLDGYIARKMRLGSEFGAFLDPVADKLMV 113

Query: 245 SS 246
           ++
Sbjct: 114 AA 115


>AT4G04870.1 | Symbols: CLS | CLS (CARDIOLIPIN SYNTHASE);
           cardiolipin synthase/ phosphatidyltransferase |
           chr4:2461904-2464004 REVERSE
          Length = 341

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 16/94 (17%)

Query: 159 QNHHKQEDSRS---KLLTLPTILTLGRVAAVPLLVSTFYLDSWW--GRTATTSIFIAAAV 213
           +N  K+ED        + +P ++++ R+ + P+L        WW       +S F+  AV
Sbjct: 126 RNDSKEEDGGKLVKSFVNVPNMISMARLVSGPVL--------WWMISNEMYSSAFLGLAV 177

Query: 214 T---DWLDGYLARKMRLGSAFGAFLDPVADKVCV 244
           +   DWLDGY+AR+M++ S  G++LDP+ADKV +
Sbjct: 178 SGASDWLDGYVARRMKINSVVGSYLDPLADKVLI 211