Jatropha Genome Database

JcCB0143121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143121.10 - phase: 0 /pseudo
         (319 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20180.2 | Symbols: PIL5 | PIL5 (PHYTOCHROME INTERACTING FACT...   101   6e-22
AT2G20180.1 | Symbols: PIL5, PIF1 | PIL5 (PHYTOCHROME INTERACTIN...    60   2e-09
AT4G28811.1 | Symbols:  | transcription regulator | chr4:1422533...    59   5e-09
AT4G28790.2 | Symbols:  | basic helix-loop-helix (bHLH) family p...    57   1e-08
AT4G28790.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    57   2e-08
AT4G28800.1 | Symbols:  | transcription factor | chr4:14221970-1...    56   3e-08
AT2G43010.2 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interactin...    51   1e-06
AT2G43010.1 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interactin...    50   1e-06

>AT2G20180.2 | Symbols: PIL5 | PIL5 (PHYTOCHROME INTERACTING FACTOR
           3-LIKE 5); DNA binding / phytochrome binding /
           transcription factor | chr2:8704525-8706538 REVERSE
          Length = 478

 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 110/247 (44%), Gaps = 54/247 (21%)

Query: 1   MNHYVPDFEMDEDCAIPTSSTFTR-PKKSITS---EDEIMELLWQNGQVVVQSQTQMSLK 56
           M+H+VPDF+ D+D     +S+    P+KSIT+   +D++MELLWQNGQVVVQ+Q ++  K
Sbjct: 1   MHHFVPDFDTDDDYVNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVVVQNQ-RLHTK 59

Query: 57  KLPHSKYDDAVLPVEASNTREIRSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQDFC 116
           K   S     +LP            Q+     Q+LF+QEDEM SWLHYPL     D DFC
Sbjct: 60  K--PSSSPPKLLPS--------MDPQQQPSSDQNLFIQEDEMTSWLHYPLR----DDDFC 105

Query: 117 ADLLYPXXXXXXXXXXXXXXXXXXXIQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 176
           +DLL+                                                       
Sbjct: 106 SDLLF------------------------SAAPTATATATVSQVTAARPPVSSTNESRPP 141

Query: 177 VHNFAYFSKHR-----ARGGVLEPGPSNLRHAVRESTVVDSSDTPAMPSESRVSEAAVAR 231
           V NF  FS+ R      RGG  E GP   +  VREST V  S TP+    +  SE+ + R
Sbjct: 142 VRNFMNFSRLRGDFNNGRGG--ESGPLLSKAVVRESTQVSPSATPS----AAASESGLTR 195

Query: 232 NTAGVSS 238
            T G  S
Sbjct: 196 RTDGTDS 202


>AT2G20180.1 | Symbols: PIL5, PIF1 | PIL5 (PHYTOCHROME INTERACTING
           FACTOR 3-LIKE 5); DNA binding / phytochrome binding /
           transcription factor | chr2:8704525-8706237 REVERSE
          Length = 407

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 39/162 (24%)

Query: 82  QEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQDFCADLLYPXXXXXXXXXXXXXXXXXXX 141
           Q+     Q+LF+QEDEM SWLHYPL     D DFC+DLL+                    
Sbjct: 4   QQQPSSDQNLFIQEDEMTSWLHYPLR----DDDFCSDLLF-------------------- 39

Query: 142 IQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHNFAYFSKHR-----ARGGVLEPG 196
                                              V NF  FS+ R      RGG  E G
Sbjct: 40  ----SAAPTATATATVSQVTAARPPVSSTNESRPPVRNFMNFSRLRGDFNNGRGG--ESG 93

Query: 197 PSNLRHAVRESTVVDSSDTPAMPSESRVSEAAVARNTAGVSS 238
           P   +  VREST V  S TP+    +  SE+ + R T G  S
Sbjct: 94  PLLSKAVVRESTQVSPSATPS----AAASESGLTRRTDGTDS 131


>AT4G28811.1 | Symbols:  | transcription regulator |
           chr4:14225335-14227840 FORWARD
          Length = 544

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 25/114 (21%)

Query: 18  TSSTFTRPKKSIT---------SEDEIMELLWQNGQVVVQSQTQMSL-----KKLPHSKY 63
           TS+  T P+ S++         SED+++ELLW++GQVV   QTQ  +     +       
Sbjct: 85  TSTPATHPQSSVSLPPPPPIAPSEDDVVELLWKSGQVVQSIQTQRPIPPPIFRGSGSGGG 144

Query: 64  DDAVLPVEASNTREIRSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQDFCA 117
           ++ VLP+              H   Q++F+QEDEMASWL++PL    F     +
Sbjct: 145 EETVLPLPPL-----------HPSHQNIFIQEDEMASWLYHPLRQDYFSSGVAS 187


>AT4G28790.2 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr4:14218329-14219887 FORWARD
          Length = 340

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 25  PKKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLPHSKYDDAVLPVEASNTREIRSTQEH 84
           P+K I  ED+I+ELL ++ QVV  SQTQ      P           E +          +
Sbjct: 17  PEKYIMGEDDIVELLGKSSQVVTSSQTQTPSCDPPLILRGSGSGDGEGNGPLPQPPPPLY 76

Query: 85  HQQQQHLFMQEDEMASWLHYPLNDTNFDQDFCADLLY 121
           HQQ   LF+QEDEMASWLH P    N      + LLY
Sbjct: 77  HQQS--LFIQEDEMASWLHQP----NRQDYLYSQLLY 107


>AT4G28790.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr4:14218329-14220173 FORWARD
          Length = 413

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 25  PKKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLPHSKYDDAVLPVEASNTREIRSTQEH 84
           P+K I  ED+I+ELL ++ QVV  SQTQ      P           E +          +
Sbjct: 17  PEKYIMGEDDIVELLGKSSQVVTSSQTQTPSCDPPLILRGSGSGDGEGNGPLPQPPPPLY 76

Query: 85  HQQQQHLFMQEDEMASWLHYPLNDTNFDQDFCADLLY 121
           HQQ   LF+QEDEMASWLH P    N      + LLY
Sbjct: 77  HQQS--LFIQEDEMASWLHQP----NRQDYLYSQLLY 107


>AT4G28800.1 | Symbols:  | transcription factor |
           chr4:14221970-14224075 FORWARD
          Length = 445

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 17/97 (17%)

Query: 29  ITSEDEIMELLWQNGQVVVQSQTQMSLKKLPHSKYDDAVLPVEASNTR----EIRSTQEH 84
           I  ED+I+ELLWQ+GQVV  +QT           YD   +   + + R       S    
Sbjct: 16  IRREDDIVELLWQSGQVVGTNQTH-------RQSYDPPPILRGSGSGRGEENAPLSQPPP 68

Query: 85  HQQQQHLFMQEDEMASWLHYPLNDTNFDQD-FCADLL 120
           H  QQ+LF+QE EM SWLH+     ++ Q+ FC++LL
Sbjct: 69  HLHQQNLFIQEGEMYSWLHH-----SYRQNYFCSELL 100


>AT2G43010.2 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interacting
           factor 4); DNA binding / protein binding / transcription
           factor | chr2:17887003-17888823 FORWARD
          Length = 428

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 23/91 (25%)

Query: 26  KKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLPHSKYDDAVLPVEASNTREIRSTQEHH 85
           ++SI  +DE++ELLW++GQVV+QSQT                   E + T++    Q+HH
Sbjct: 18  RRSIRPQDELVELLWRDGQVVLQSQTHR-----------------EQTQTQK----QDHH 56

Query: 86  QQ--QQHLFMQEDEMASWLHYPLNDTNFDQD 114
           ++  +   F+++ E  SW+ YP ++  F+ D
Sbjct: 57  EEALRSSTFLEDQETVSWIQYPPDEDPFEPD 87


>AT2G43010.1 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interacting
           factor 4); DNA binding / protein binding / transcription
           factor | chr2:17887003-17888823 FORWARD
          Length = 430

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 23/91 (25%)

Query: 26  KKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLPHSKYDDAVLPVEASNTREIRSTQEHH 85
           ++SI  +DE++ELLW++GQVV+QSQT                   E + T++    Q+HH
Sbjct: 18  RRSIRPQDELVELLWRDGQVVLQSQTHR-----------------EQTQTQK----QDHH 56

Query: 86  QQ--QQHLFMQEDEMASWLHYPLNDTNFDQD 114
           ++  +   F+++ E  SW+ YP ++  F+ D
Sbjct: 57  EEALRSSTFLEDQETVSWIQYPPDEDPFEPD 87