Jatropha Genome Database

JcCB0142901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0142901.10 + phase: 0 /pseudo/partial
         (355 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42620.1 | Symbols:  | metalloendopeptidase/ zinc ion binding...   394   e-110

>AT5G42620.1 | Symbols:  | metalloendopeptidase/ zinc ion binding |
           chr5:17066630-17071045 FORWARD
          Length = 841

 Score =  394 bits (1012), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/222 (84%), Positives = 198/222 (89%), Gaps = 16/222 (7%)

Query: 150 IHEVMHVLGFDPHAFAHFRDDRKRRRGQVTEQVMDEKLGRMVTRVVLPRVVMHSRHHYGA 209
           IHEVMHVLGFDPHAFAHFRD+RKRRR +VTEQ MDEKLGR+VTRVVLPRVVMHSRHHYGA
Sbjct: 292 IHEVMHVLGFDPHAFAHFRDERKRRRTEVTEQQMDEKLGRLVTRVVLPRVVMHSRHHYGA 351

Query: 210 FSENFTGLELEDGG----EGAH------------QSVDTRSVVSKMTLALLEDSGWYQAN 253
           FS+NF+GLELEDGG     G+H             SVDTRSVVSKMTLALLEDSGWY+AN
Sbjct: 352 FSQNFSGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKAN 411

Query: 254 YSMADRLDWGRNQGTDFVTLPCNLWKGAYHCNTTQLSGCTYNREAEGYCPIVSYTGDLPQ 313
           YSMADRLDWGRNQGT FVT PCN+WKGAYHCNTTQLSGCTYNREAEGYCPI+SY G+LPQ
Sbjct: 412 YSMADRLDWGRNQGTQFVTSPCNMWKGAYHCNTTQLSGCTYNREAEGYCPILSYNGELPQ 471

Query: 314 WARYFPQPNKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDR 355
           WARYFPQPNKGGQSSLADYCTYFVAYSDGSCTD NSARAPDR
Sbjct: 472 WARYFPQPNKGGQSSLADYCTYFVAYSDGSCTDINSARAPDR 513