Jatropha Genome Database

JcCB0141621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0141621.10 + phase: 0 /pseudo/partial
         (250 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60420.1 | Symbols:  | DC1 domain-containing protein | chr1:2...   258   2e-69
AT4G31240.2 | Symbols:  | INVOLVED IN: cell redox homeostasis; L...   120   1e-27
AT4G31240.1 | Symbols:  | INVOLVED IN: cell redox homeostasis; L...   120   1e-27

>AT1G60420.1 | Symbols:  | DC1 domain-containing protein |
           chr1:22261978-22264243 FORWARD
          Length = 578

 Score =  258 bits (659), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 153/195 (78%), Gaps = 4/195 (2%)

Query: 1   MAEMA---NGD-SHDFRSLLSSSDCDYLIRNNGDQVKIDSLKGKKIGLYFSASWCGPCQR 56
           MAE +   NGD + D  SLLSS   D+L+RN+G+QVK+DSL GKKIGLYFSA+WCGPCQR
Sbjct: 1   MAETSKQVNGDDAQDLHSLLSSPARDFLVRNDGEQVKVDSLLGKKIGLYFSAAWCGPCQR 60

Query: 57  FTPVLVEAYNELAPKGNFEIVFISADEDDESFKKYFSKMPWLAIPFSESETRDRLDQLFK 116
           FTP LVE YNEL+ K  FEIVF+S DED+ESF  YF KMPWLA+PF++SETRDRLD+LFK
Sbjct: 61  FTPQLVEVYNELSSKVGFEIVFVSGDEDEESFGDYFRKMPWLAVPFTDSETRDRLDELFK 120

Query: 117 IQGIPHLVIIDENGKVSSESGVEIIREYGVEAYPFTPXXXXXXXXXXXXARRNQSLRSIL 176
           ++GIP+LV++D++GK+ +E+GV +IR YG +AYPFTP            ARR Q+LRS+L
Sbjct: 121 VRGIPNLVMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARRGQTLRSVL 180

Query: 177 VVHSRDYVISSDGKK 191
           V  SRD+VIS DG K
Sbjct: 181 VTPSRDFVISPDGNK 195



 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 95/151 (62%), Gaps = 2/151 (1%)

Query: 3   EMANGDSHDFRSLLSSSDCDYLIRNNGDQVKIDSLKGKKIGLYFSASWCGPCQRFTPVLV 62
           E A  ++    SLL S D +Y++  +G +V +  L GK I +YFSA WC PC+ FTP LV
Sbjct: 327 EKAKVEAQTLESLLVSGDLNYVLGKDGAKVLVSDLVGKTILMYFSAHWCPPCRAFTPKLV 386

Query: 63  EAYNELAPKGN-FEIVFISADEDDESFKKYFSKMPWLAIPFSESETRDRLDQLFKIQGIP 121
           E Y ++  +   FE++FIS+D D ESF +Y+S+MPWLA+PF +   +  L + FK+ GIP
Sbjct: 387 EVYKQIKERNEAFELIFISSDRDQESFDEYYSQMPWLALPFGDPR-KASLAKTFKVGGIP 445

Query: 122 HLVIIDENGKVSSESGVEIIREYGVEAYPFT 152
            L  +   G+  ++   +++  +G +AYPFT
Sbjct: 446 MLAALGPTGQTVTKEARDLVVAHGADAYPFT 476



 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 103/181 (56%), Gaps = 2/181 (1%)

Query: 12  FRSLLSSSDCDYLIRNNGDQVKIDSLKGKKIGLYFSASWCGPCQRFTPVLVEAYNELAP- 70
            RS+L +   D++I  +G++V +  L+GK IGL FS +    C   TP LVE Y +L   
Sbjct: 176 LRSVLVTPSRDFVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKEN 235

Query: 71  KGNFEIVFISADEDDESFKKYFSKMPWLAIPFSESETRDRLDQLFKIQGIPHLVIIDENG 130
           K +FEIV IS ++D+ESF + F   PWLA+PF++ ++  +L + F +  +P LVI+  +G
Sbjct: 236 KEDFEIVLISLEDDEESFNQDFKTKPWLALPFND-KSGSKLARHFMLSTLPTLVILGPDG 294

Query: 131 KVSSESGVEIIREYGVEAYPFTPXXXXXXXXXXXXARRNQSLRSILVVHSRDYVISSDGK 190
           K    +  E I +YGV AYPFTP                Q+L S+LV    +YV+  DG 
Sbjct: 295 KTRHSNVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGA 354

Query: 191 K 191
           K
Sbjct: 355 K 355


>AT4G31240.2 | Symbols:  | INVOLVED IN: cell redox homeostasis;
           LOCATED IN: cellular_component unknown; EXPRESSED IN: 21
           plant structures; EXPRESSED DURING: 9 growth stages;
           CONTAINS InterPro DOMAIN/s: Thioredoxin fold
           (InterPro:IPR012335), Thioredoxin-like
           (InterPro:IPR017936), Thioredoxin-like fold
           (InterPro:IPR012336), C1-like (InterPro:IPR011424); BEST
           Arabidopsis thaliana protein match is: DC1
           domain-containing protein (TAIR:AT1G60420.1); Has 1190
           Blast hits to 724 proteins in 157 species: Archae - 0;
           Bacteria - 225; Metazoa - 381; Fungi - 0; Plants - 174;
           Viruses - 0; Other Eukaryotes - 410 (source: NCBI
           BLink). | chr4:15176637-15177986 REVERSE
          Length = 392

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 3/140 (2%)

Query: 15  LLSSSDCDYLIRNNGDQVKIDSLKGKKIGLYFSASWCGPCQRFTPVLVEAYNELAP--KG 72
           LL+    +Y++  NG +V +  L GK IGLYF A WC P + FT  LV+ YNELA   KG
Sbjct: 179 LLTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKG 238

Query: 73  NFEIVFISADEDDESFKKYFSKMPWLAIPFSESETRDRLDQLFKIQGIPHLVIIDENGKV 132
           +FE++ IS D D   F    + MPWLAIP+ E  TR  L ++F ++ IP LVII    K 
Sbjct: 239 SFEVILISTDRDSREFNINMTNMPWLAIPY-EDRTRQDLCRIFNVKLIPALVIIGPEEKT 297

Query: 133 SSESGVEIIREYGVEAYPFT 152
            + +  E++  YG  ++PFT
Sbjct: 298 VTTNAREMVSLYGSRSFPFT 317



 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 105/185 (56%), Gaps = 3/185 (1%)

Query: 8   DSHDFRSLLSSSDCDYLIRNNGDQVKIDSLKGKKIGLYFSASWCGPCQRFTPVLVEAYNE 67
           +S D  S+L++   ++L+ ++G +V ++ + GK I L+FSA WC PC+ FTP L++ Y  
Sbjct: 13  ESGDLYSILAAEGIEFLLSHSG-EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYEN 71

Query: 68  LAPKG-NFEIVFISADEDDESFKKYFSKMPWLAIPFSESETRDRLDQLFKIQGIPHLVII 126
           L  +G   EI+F+S D D  SF ++F  MPWLA+PF+ S   ++L   + I  IP LV +
Sbjct: 72  LQNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLS-LLNKLRDKYGISRIPSLVPL 130

Query: 127 DENGKVSSESGVEIIREYGVEAYPFTPXXXXXXXXXXXXARRNQSLRSILVVHSRDYVIS 186
             +    +E  + +I +YG EA+PFT              R    L  +L   SR+YV++
Sbjct: 131 YSDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVA 190

Query: 187 SDGKK 191
            +G K
Sbjct: 191 RNGSK 195


>AT4G31240.1 | Symbols:  | INVOLVED IN: cell redox homeostasis;
           LOCATED IN: cellular_component unknown; EXPRESSED IN: 21
           plant structures; EXPRESSED DURING: 9 growth stages;
           CONTAINS InterPro DOMAIN/s: Thioredoxin fold
           (InterPro:IPR012335), Thioredoxin-like
           (InterPro:IPR017936), Thioredoxin-like fold
           (InterPro:IPR012336), C1-like (InterPro:IPR011424); BEST
           Arabidopsis thaliana protein match is: DC1
           domain-containing protein (TAIR:AT1G60420.1); Has 1190
           Blast hits to 724 proteins in 157 species: Archae - 0;
           Bacteria - 225; Metazoa - 381; Fungi - 0; Plants - 174;
           Viruses - 0; Other Eukaryotes - 410 (source: NCBI
           BLink). | chr4:15176637-15177986 REVERSE
          Length = 392

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 3/140 (2%)

Query: 15  LLSSSDCDYLIRNNGDQVKIDSLKGKKIGLYFSASWCGPCQRFTPVLVEAYNELAP--KG 72
           LL+    +Y++  NG +V +  L GK IGLYF A WC P + FT  LV+ YNELA   KG
Sbjct: 179 LLTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKG 238

Query: 73  NFEIVFISADEDDESFKKYFSKMPWLAIPFSESETRDRLDQLFKIQGIPHLVIIDENGKV 132
           +FE++ IS D D   F    + MPWLAIP+ E  TR  L ++F ++ IP LVII    K 
Sbjct: 239 SFEVILISTDRDSREFNINMTNMPWLAIPY-EDRTRQDLCRIFNVKLIPALVIIGPEEKT 297

Query: 133 SSESGVEIIREYGVEAYPFT 152
            + +  E++  YG  ++PFT
Sbjct: 298 VTTNAREMVSLYGSRSFPFT 317



 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 105/185 (56%), Gaps = 3/185 (1%)

Query: 8   DSHDFRSLLSSSDCDYLIRNNGDQVKIDSLKGKKIGLYFSASWCGPCQRFTPVLVEAYNE 67
           +S D  S+L++   ++L+ ++G +V ++ + GK I L+FSA WC PC+ FTP L++ Y  
Sbjct: 13  ESGDLYSILAAEGIEFLLSHSG-EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYEN 71

Query: 68  LAPKG-NFEIVFISADEDDESFKKYFSKMPWLAIPFSESETRDRLDQLFKIQGIPHLVII 126
           L  +G   EI+F+S D D  SF ++F  MPWLA+PF+ S   ++L   + I  IP LV +
Sbjct: 72  LQNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLS-LLNKLRDKYGISRIPSLVPL 130

Query: 127 DENGKVSSESGVEIIREYGVEAYPFTPXXXXXXXXXXXXARRNQSLRSILVVHSRDYVIS 186
             +    +E  + +I +YG EA+PFT              R    L  +L   SR+YV++
Sbjct: 131 YSDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVA 190

Query: 187 SDGKK 191
            +G K
Sbjct: 191 RNGSK 195