Jatropha Genome Database

JcCB0139081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0139081.10 + phase: 1 /partial
         (140 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58670.2 | Symbols:  | unknown protein | chr3:21703693-217053...   135   8e-33
AT3G58670.1 | Symbols:  | unknown protein | chr3:21703693-217053...   135   8e-33
AT2G42670.1 | Symbols:  | unknown protein | chr2:17772004-177737...   129   4e-31
AT2G42670.2 | Symbols:  | unknown protein | chr2:17772004-177737...   129   6e-31
AT1G18490.1 | Symbols:  | unknown protein | chr1:6367116-6368640...    92   1e-19
AT5G39890.1 | Symbols:  | unknown protein | chr5:15974543-159760...    92   1e-19
AT5G15120.1 | Symbols:  | unknown protein | chr5:4898814-4900351...    86   7e-18

>AT3G58670.2 | Symbols:  | unknown protein | chr3:21703693-21705314
           REVERSE
          Length = 242

 Score =  135 bits (340), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/135 (49%), Positives = 86/135 (63%), Gaps = 4/135 (2%)

Query: 5   YWNTHIEHFRWSRYQYIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSGGNIHCF 64
           Y + H++ + W+        S       ARPAKLV+D +M +P   T LYP++GGNIHCF
Sbjct: 111 YGSMHVKSYDWAEPDQ----SELDDPLQARPAKLVKDIDMTSPSPATTLYPTTGGNIHCF 166

Query: 65  KALTPCALFDVLSPPYSSEDGRHCSYFRRVPARVLPEGAAELCGIQPSEVAWLEETPPPE 124
           KA+T CA+FD+LSPPYSS  GRHC+YFR+ P   LP     + G   S V WLEE  PP+
Sbjct: 167 KAITHCAIFDILSPPYSSTHGRHCNYFRKSPMLDLPGEIEVMNGEVISNVTWLEEYQPPD 226

Query: 125 NFVVQRGLYKGPNIR 139
           NFV+ R  Y+GP IR
Sbjct: 227 NFVIWRVPYRGPVIR 241


>AT3G58670.1 | Symbols:  | unknown protein | chr3:21703693-21705314
           REVERSE
          Length = 242

 Score =  135 bits (340), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/135 (49%), Positives = 86/135 (63%), Gaps = 4/135 (2%)

Query: 5   YWNTHIEHFRWSRYQYIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSGGNIHCF 64
           Y + H++ + W+        S       ARPAKLV+D +M +P   T LYP++GGNIHCF
Sbjct: 111 YGSMHVKSYDWAEPDQ----SELDDPLQARPAKLVKDIDMTSPSPATTLYPTTGGNIHCF 166

Query: 65  KALTPCALFDVLSPPYSSEDGRHCSYFRRVPARVLPEGAAELCGIQPSEVAWLEETPPPE 124
           KA+T CA+FD+LSPPYSS  GRHC+YFR+ P   LP     + G   S V WLEE  PP+
Sbjct: 167 KAITHCAIFDILSPPYSSTHGRHCNYFRKSPMLDLPGEIEVMNGEVISNVTWLEEYQPPD 226

Query: 125 NFVVQRGLYKGPNIR 139
           NFV+ R  Y+GP IR
Sbjct: 227 NFVIWRVPYRGPVIR 241


>AT2G42670.1 | Symbols:  | unknown protein | chr2:17772004-17773700
           REVERSE
          Length = 241

 Score =  129 bits (325), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 5/135 (3%)

Query: 5   YWNTHIEHFRWSRYQYIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSGGNIHCF 64
           Y + H++ + W   Q    L+       ARPAKLV+D EM A    T LYP SGGNIHCF
Sbjct: 111 YGSMHVKSYDWLEPQ----LTEPEDPSQARPAKLVKDTEMTAQSPVTTLYPKSGGNIHCF 166

Query: 65  KALTPCALFDVLSPPYSSEDGRHCSYFRRVPARVLPEGAAELCGIQPSEVAWLEETPPPE 124
           KA+T CA+ D+L+PPYSSE  RHC+YFR+     LP G  E+ G   ++V WLEE  PP+
Sbjct: 167 KAITHCAILDILAPPYSSEHDRHCTYFRKSRREDLP-GELEVDGEVVTDVTWLEEFQPPD 225

Query: 125 NFVVQRGLYKGPNIR 139
           +FV++R  Y+GP IR
Sbjct: 226 DFVIRRIPYRGPVIR 240


>AT2G42670.2 | Symbols:  | unknown protein | chr2:17772004-17773700
           REVERSE
          Length = 242

 Score =  129 bits (324), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 86/135 (63%), Gaps = 4/135 (2%)

Query: 5   YWNTHIEHFRWSRYQYIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSGGNIHCF 64
           Y + H++ + W   Q  +          ARPAKLV+D EM A    T LYP SGGNIHCF
Sbjct: 111 YGSMHVKSYDWLEPQLTEPEDP---SQEARPAKLVKDTEMTAQSPVTTLYPKSGGNIHCF 167

Query: 65  KALTPCALFDVLSPPYSSEDGRHCSYFRRVPARVLPEGAAELCGIQPSEVAWLEETPPPE 124
           KA+T CA+ D+L+PPYSSE  RHC+YFR+     LP G  E+ G   ++V WLEE  PP+
Sbjct: 168 KAITHCAILDILAPPYSSEHDRHCTYFRKSRREDLP-GELEVDGEVVTDVTWLEEFQPPD 226

Query: 125 NFVVQRGLYKGPNIR 139
           +FV++R  Y+GP IR
Sbjct: 227 DFVIRRIPYRGPVIR 241


>AT1G18490.1 | Symbols:  | unknown protein | chr1:6367116-6368640
           FORWARD
          Length = 282

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 5   YWNTHIEHFRWSRYQ-YIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSGGNIHC 63
           Y + H++ + W      I +         AR AKLV D  +        LYP +GGN+HC
Sbjct: 144 YGSLHVKAYDWVEPPCIITQDKGVPGSLPARLAKLVSDKVITPQSEIPALYPKTGGNLHC 203

Query: 64  FKALTPCALFDVLSPPYSSEDGRHCSYFRRVP--ARVLPEGAAELCGIQPSEVAWLEETP 121
           F ALTPCA+ D+LSPPY    GR CSY+   P     L  G  ++   +  E AWL +  
Sbjct: 204 FTALTPCAVLDILSPPYKESVGRSCSYYMDYPFSTFALENGMKKVDEGKEDEYAWLVQID 263

Query: 122 PPENFVVQRGLYKGPNIRL 140
            P++  ++ G Y GP IR+
Sbjct: 264 TPDDLHMRPGSYTGPTIRV 282


>AT5G39890.1 | Symbols:  | unknown protein | chr5:15974543-15976013
           FORWARD
          Length = 276

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 33  ARPAKLVRDCEMIAPCGTTVLYPSSGGNIHCFKALTPCALFDVLSPPYSSEDGRHCSYFR 92
            R AK+  D +  APC T++LYP+ GGN+HCF A T CA+ DV+ PPYS   GRHC+Y+ 
Sbjct: 168 TRLAKVKVDSDFTAPCDTSILYPADGGNMHCFTAKTACAVLDVIGPPYSDPAGRHCTYYF 227

Query: 93  RVPARVLPEGAAELCGIQPSEVAWLEE-TPPPENFVVQRGLYKGPNIR 139
             P          +   +    AWL+E    PE+  V   +Y GP I+
Sbjct: 228 DYPFSSFSVDGVVVAEEEKEGYAWLKEREEKPEDLTVTALMYSGPTIK 275


>AT5G15120.1 | Symbols:  | unknown protein | chr5:4898814-4900351
           FORWARD
          Length = 293

 Score = 85.9 bits (211), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 11/139 (7%)

Query: 5   YWNTHIEHFRWSRYQYIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSGGNIHCF 64
           +   HI+ + W        + +       R AKL  D    APC  ++LYP  GGN+H F
Sbjct: 161 FGTMHIKSYDWV-------VDAPMRDSKTRLAKLKVDSTFTAPCNASILYPEDGGNMHRF 213

Query: 65  KALTPCALFDVLSPPYSSEDGRHCSYFRRVPARVLPEGAAELCGIQPSE--VAWLEE--T 120
            A+T CA+ DVL PPY + +GRHC+YF   P   L     ++   +  +   AWL+E   
Sbjct: 214 TAITACAVLDVLGPPYCNPEGRHCTYFLEFPLDKLSSEDDDVLSSEEEKEGYAWLQERDD 273

Query: 121 PPPENFVVQRGLYKGPNIR 139
            P ++  V   LY+GP + 
Sbjct: 274 NPEDHTNVVGALYRGPKVE 292