Jatropha Genome Database

JcCB0137811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0137811.20 + phase: 1 /TE/partial
         (481 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00710.1 | Symbols: ORF120 | hypothetical protein | chrM:2075...    54   3e-07

>ATMG00710.1 | Symbols: ORF120 | hypothetical protein |
           chrM:207553-207915 REVERSE
          Length = 120

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 210 MNRTLMEGVRYLLSHAKLFKRFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDH 266
           MNRT++E VR +L    L K F  +A  TAV+   + P   + +  P+ VW     +Y +
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 267 LRVFGCKAFVH 277
           LR FGC A++H
Sbjct: 61  LRRFGCVAYIH 71