Jatropha Genome Database

JcCB0136181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0136181.20 - phase: 0 /pseudo/partial
         (213 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27670.1 | Symbols: HSP21 | HSP21 (HEAT SHOCK PROTEIN 21) | c...    62   2e-10

>AT4G27670.1 | Symbols: HSP21 | HSP21 (HEAT SHOCK PROTEIN 21) |
           chr4:13819048-13819895 REVERSE
          Length = 227

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 62  TAPVAPVGLWDRFPTARTVQQXXXXXXXXXXDPFAYTGTWPSEPPSPVERSGYSRGRTPW 121
           T  V+P GL D     RT++Q          D    +G            SG S  R PW
Sbjct: 77  TMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGG-------SGVSEIRAPW 129

Query: 122 EIKEGETEYKMRFDMPGMTKEDVKVWVK 149
           +IKE E E KMRFDMPG++KEDVK+ V+
Sbjct: 130 DIKEEEHEIKMRFDMPGLSKEDVKISVE 157