Jatropha Genome Database

JcCB0135871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0135871.10 - phase: 2 /TE/partial
         (298 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   107   1e-23
ATMG00810.1 | Symbols: ORF240B | hypothetical protein | chrM:227...    99   3e-21
ATMG00240.1 | Symbols: ORF111A | hypothetical protein | chrM:689...    60   2e-09

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 9/199 (4%)

Query: 1   EMKDMGEASYVIGIEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFSE 60
           +++D+G   Y +G+EI   RS   + + QR Y   +L    +  C    VP+     FS 
Sbjct: 309 KLRDLGPLKYFLGLEI--ARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSA 366

Query: 61  MQCPQNDLERKEMESIPYASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAKK 120
                 D     +++  Y  + G LMY+Q  TR DISF V  L ++     + H +A  K
Sbjct: 367 HS--GGDF----VDAKAYRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMK 419

Query: 121 ILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWKSRKQ 180
           IL Y++GT    L Y     +++  +SD+++ SC D+R+ST GY  FL    +SWKS+KQ
Sbjct: 420 ILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQ 479

Query: 181 SVIATSTIEAEFVACFEAT 199
            V++ S+ EAE+ A   AT
Sbjct: 480 QVVSKSSAEAEYRALSFAT 498


>ATMG00810.1 | Symbols: ORF240B | hypothetical protein |
           chrM:227709-228431 REVERSE
          Length = 240

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 102/194 (52%), Gaps = 10/194 (5%)

Query: 1   EMKDMGEASYVIGIEIFHNRSLGLLGLSQRAYIDKVLKRFRMEKCSARIVPI*KGDRFSE 60
            MKD+G   Y +GI+I  + S GL  LSQ  Y +++L    M  C     P+        
Sbjct: 32  SMKDLGPVHYFLGIQIKTHPS-GLF-LSQTKYAEQILNNAGMLDCKPMSTPL-------P 82

Query: 61  MQCPQNDLERKEMESIPYASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAKK 120
           ++   +    K  +   + SI G+L Y+ T TRPDIS+ V ++ +      +  +   K+
Sbjct: 83  LKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKR 141

Query: 121 ILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWKSRKQ 180
           +LRY++GT  H L   K++ L V  + DS++A C  +R+ST G+  FL    +SW +++Q
Sbjct: 142 VLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQ 201

Query: 181 SVIATSTIEAEFVA 194
             ++ S+ E E+ A
Sbjct: 202 PTVSRSSTETEYRA 215


>ATMG00240.1 | Symbols: ORF111A | hypothetical protein |
           chrM:68918-69253 REVERSE
          Length = 111

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 86  MYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAKKILRYLQGTKDHILTYRKSTHLEVVG 145
           MY+ T TRPD++F V  L ++ S       +A  K+L Y++GT    L Y  ++ L++  
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 59

Query: 146 YSDSNYASCVDSRKSTFGY 164
           ++DS++ASC D+R+S  G+
Sbjct: 60  FADSDWASCPDTRRSVTGF 78