Jatropha Genome Database

JcCB0135511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0135511.10 - phase: 2 /partial
         (247 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03415.1 | Symbols: DPB, ATDPB | DPB; protein binding / prote...   284   4e-77
AT5G02470.3 | Symbols: DPA | DPA; transcription factor | chr5:54...   172   2e-43
AT5G02470.2 | Symbols: DPA | DPA; transcription factor | chr5:54...   172   2e-43
AT5G02470.1 | Symbols: DPA | DPA; transcription factor | chr5:54...   172   2e-43

>AT5G03415.1 | Symbols: DPB, ATDPB | DPB; protein binding / protein
           heterodimerization | chr5:842842-845200 FORWARD
          Length = 385

 Score =  284 bits (726), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/152 (89%), Positives = 144/152 (94%)

Query: 96  SGRGLRQFSMKVCEKVESKGTTTYNEVADELVAEFADPSNSVSSPDQQQYDEKNIRRRVY 155
           +GRGLRQFSMKVCEKVESKG TTYNEVADELVAEFA P+N  +SPDQQQYDEKNIRRRVY
Sbjct: 100 TGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFALPNNDGTSPDQQQYDEKNIRRRVY 159

Query: 156 DALNVLMALDIISKDKKEIQWKGLPRTSLSDIEELKAERLALRNRIEKKSAYLQELEEQY 215
           DALNVLMA+DIISKDKKEIQW+GLPRTSLSDIEELK ERL+LRNRIEKK+AY QELEEQY
Sbjct: 160 DALNVLMAMDIISKDKKEIQWRGLPRTSLSDIEELKNERLSLRNRIEKKTAYSQELEEQY 219

Query: 216 VGLQNLINRNEQLYSSGNAPSGGVSLPFILVQ 247
           VGLQNLI RNE LYSSGNAPSGGV+LPFILVQ
Sbjct: 220 VGLQNLIQRNEHLYSSGNAPSGGVALPFILVQ 251


>AT5G02470.3 | Symbols: DPA | DPA; transcription factor |
           chr5:542562-544423 REVERSE
          Length = 292

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 117/153 (76%), Gaps = 1/153 (0%)

Query: 96  SGRGLRQFSMKVCEKVESKGTTTYNEVADELVAEFADPSNSVSSP-DQQQYDEKNIRRRV 154
           SG GLRQFS+ VC+K+E+K  TTY EVADE++++FA    +   P ++ +Y+EKNIRRRV
Sbjct: 50  SGGGLRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNENEYNEKNIRRRV 109

Query: 155 YDALNVLMALDIISKDKKEIQWKGLPRTSLSDIEELKAERLALRNRIEKKSAYLQELEEQ 214
           YDALNV MALDII++DKKEI+WKGLP T   D+EE+K +R  + + ++KK+A+L+EL E+
Sbjct: 110 YDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDRNKVMSSVQKKAAFLKELREK 169

Query: 215 YVGLQNLINRNEQLYSSGNAPSGGVSLPFILVQ 247
              L++L++RN+++      P+ G +LPFIL++
Sbjct: 170 VSSLESLMSRNQEMVVKTQGPAEGFTLPFILLE 202


>AT5G02470.2 | Symbols: DPA | DPA; transcription factor |
           chr5:542562-544423 REVERSE
          Length = 292

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 117/153 (76%), Gaps = 1/153 (0%)

Query: 96  SGRGLRQFSMKVCEKVESKGTTTYNEVADELVAEFADPSNSVSSP-DQQQYDEKNIRRRV 154
           SG GLRQFS+ VC+K+E+K  TTY EVADE++++FA    +   P ++ +Y+EKNIRRRV
Sbjct: 50  SGGGLRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNENEYNEKNIRRRV 109

Query: 155 YDALNVLMALDIISKDKKEIQWKGLPRTSLSDIEELKAERLALRNRIEKKSAYLQELEEQ 214
           YDALNV MALDII++DKKEI+WKGLP T   D+EE+K +R  + + ++KK+A+L+EL E+
Sbjct: 110 YDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDRNKVMSSVQKKAAFLKELREK 169

Query: 215 YVGLQNLINRNEQLYSSGNAPSGGVSLPFILVQ 247
              L++L++RN+++      P+ G +LPFIL++
Sbjct: 170 VSSLESLMSRNQEMVVKTQGPAEGFTLPFILLE 202


>AT5G02470.1 | Symbols: DPA | DPA; transcription factor |
           chr5:542562-544423 REVERSE
          Length = 292

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 117/153 (76%), Gaps = 1/153 (0%)

Query: 96  SGRGLRQFSMKVCEKVESKGTTTYNEVADELVAEFADPSNSVSSP-DQQQYDEKNIRRRV 154
           SG GLRQFS+ VC+K+E+K  TTY EVADE++++FA    +   P ++ +Y+EKNIRRRV
Sbjct: 50  SGGGLRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNENEYNEKNIRRRV 109

Query: 155 YDALNVLMALDIISKDKKEIQWKGLPRTSLSDIEELKAERLALRNRIEKKSAYLQELEEQ 214
           YDALNV MALDII++DKKEI+WKGLP T   D+EE+K +R  + + ++KK+A+L+EL E+
Sbjct: 110 YDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDRNKVMSSVQKKAAFLKELREK 169

Query: 215 YVGLQNLINRNEQLYSSGNAPSGGVSLPFILVQ 247
              L++L++RN+++      P+ G +LPFIL++
Sbjct: 170 VSSLESLMSRNQEMVVKTQGPAEGFTLPFILLE 202