Jatropha Genome Database

JcCB0135201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0135201.10 + phase: 0 /partial
         (141 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11270.1 | Symbols:  | transducin family protein / WD-40 repe...   175   6e-45

>AT4G11270.1 | Symbols:  | transducin family protein / WD-40 repeat
            family protein | chr4:6854461-6859490 FORWARD
          Length = 1446

 Score =  175 bits (444), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 118/137 (86%)

Query: 2    LLSGASETAITTVISALSFSPDGEGLIAFSEHGLMIRWWSLGSMWWEKLNRNLVPVQCTK 61
             L GASE+A+TT ISALSFSPDGEGL+AFSE+GLMIRWWSLGS+WWEKL+++L P+QCTK
Sbjct: 1307 FLRGASESAVTTAISALSFSPDGEGLVAFSENGLMIRWWSLGSVWWEKLSQSLTPIQCTK 1366

Query: 62   LIFVPLWEGFSPNSSRTSIMASISGHDRQTNLQENARSLNYADSLKILIQNLDLSYRLEW 121
            LIF+  W+GFS +SSRTS+++SIS  +++  LQE A+++++ + LK L+Q+LDLSYRLEW
Sbjct: 1367 LIFIHPWDGFSSSSSRTSVISSISNDEQELPLQETAKNISHVERLKQLVQHLDLSYRLEW 1426

Query: 122  VGGRKVLLSRHGMELGT 138
               RKV+L+RH +ELGT
Sbjct: 1427 ASERKVVLTRHNVELGT 1443