Jatropha Genome Database

JcCB0134471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0134471.10 + phase: 1 /partial
         (286 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32970.1 | Symbols:  | unknown protein | chr2:13991744-139940...   322   2e-88

>AT2G32970.1 | Symbols:  | unknown protein | chr2:13991744-13994082
           REVERSE
          Length = 577

 Score =  322 bits (825), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/272 (58%), Positives = 202/272 (74%), Gaps = 4/272 (1%)

Query: 1   FYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNFQKAITWFLMXXXX 60
           FYDLYKNVPVLKATASRLCGPLFDW+ETW+MVSRIKYLGTMLFLHNFQKA+ W L     
Sbjct: 297 FYDLYKNVPVLKATASRLCGPLFDWVETWDMVSRIKYLGTMLFLHNFQKAVKWALTMARA 356

Query: 61  XXXXXXXXXQPLLEPLMEVLGFLLPMWNVLIEVVENLVSIIWVATDSVFTAVIDLIQIVL 120
                     PL+ PL+++L  LLP+WN L E V +LVS++W+  +S    V D++++VL
Sbjct: 357 MQSFVSFCIMPLVNPLLDILELLLPLWNSLAETVASLVSVVWIVMESGCNLVGDVVELVL 416

Query: 121 WPMWFIISMVWTIATSVLYPIFWILWEIFYAPIRMVLAIASFIALIGAWISELIGDLWRS 180
            P    IS+VW +  +VL P+FWI+WE+ YAPIR+V A+A+ +A+  ++I ++IGDLWR 
Sbjct: 417 LP----ISLVWNVTNTVLLPLFWIIWEVVYAPIRVVAALANCLAVSFSYIFDVIGDLWRY 472

Query: 181 VSCIFRVASATEATISTYEVSMWRSLWNDLFSQVFRALRSILNGFVAFFTACNRHRLSIY 240
           +S I ++AS ++A + TYEVSMWR+LWNDLFS VFRA+RSILNGFVAFF ACNRHRLS Y
Sbjct: 473 MSSILQLASDSQAAVKTYEVSMWRTLWNDLFSHVFRAVRSILNGFVAFFAACNRHRLSTY 532

Query: 241 NHIQEFIRRIFGQAPRSQPSGYRHNKPTSGRQ 272
           NHIQEF+ R+ G+  R +    RH K     Q
Sbjct: 533 NHIQEFMERVHGRTTRPESIDSRHGKSVKNNQ 564