Jatropha Genome Database

JcCB0133991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133991.20 - phase: 0 /partial
         (277 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39590.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   375   e-104

>AT5G39590.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: N-terminal protein myristoylation; LOCATED
           IN: cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: TLDc (InterPro:IPR006571); Has 144
           Blast hits to 144 proteins in 62 species: Archae - 0;
           Bacteria - 0; Metazoa - 76; Fungi - 9; Plants - 26;
           Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
           | chr5:15851483-15853768 FORWARD
          Length = 542

 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 173/279 (62%), Positives = 213/279 (76%), Gaps = 7/279 (2%)

Query: 6   PSTSSQGATPPREPSGNHLLTCGRAWAISLTLWSEMSSEILKPYLPSD-GDGTLSL---- 60
           PS S+       + S N LLTCGRAWAISLT  S +S EIL    P + G+    L    
Sbjct: 264 PSKSTAVDDSASKTSENTLLTCGRAWAISLTSKSTISEEILSSCFPGNSGEPNEHLLYRS 323

Query: 61  --HGRGLNRFWSNIEGYHGPLLFLVSATSGNAHEDNTNVRKWIIGALTQQGFENKDMFYG 118
             HG+G+NR WSN+EGYH P+L ++SA+    HE  ++ RKW+IGA+ QQGFEN+D FYG
Sbjct: 324 YYHGKGMNRLWSNVEGYHAPILVIISASCKVEHEATSSERKWVIGAILQQGFENRDAFYG 383

Query: 119 SSGKLYAICPIFHTFSHSGKDKNFVYSHLHPTRRAYEPHPKPVGIAFGGTIGNERIFIDE 178
           SSG L++I P+FH FS SGK+KNF YSHLHP    Y+ HPKPVGI FGGT+GNERIFIDE
Sbjct: 384 SSGNLFSISPVFHAFSSSGKEKNFAYSHLHPAGGVYDAHPKPVGIGFGGTLGNERIFIDE 443

Query: 179 DFARVTVRHHAVDKTYQPGSIFPSQGFLPVEALISEVEVWGLGGRTAKEVQASYKKREDL 238
           DFA++TVRHHAVDKTYQ GS+FP+QG+LPVEAL+ ++E WGLGG  A+E+Q  Y+KRE+L
Sbjct: 444 DFAKITVRHHAVDKTYQSGSLFPNQGYLPVEALVLDIEAWGLGGNKAREIQQKYQKREEL 503

Query: 239 FIEQRRKVDLKTFASWEDSPEKMMMDMMSDPNAVRREDR 277
           F  QRRK+DLKTF +WEDSPEKMMMDMM +PNA R+E+R
Sbjct: 504 FTNQRRKIDLKTFTNWEDSPEKMMMDMMGNPNAPRKEER 542