Jatropha Genome Database

JcCB0133991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133991.10 + phase: 2 /partial
         (86 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00170.1 | Symbols: RPOC2 | RNA polymerase beta' subunit-2 | ...    77   3e-15

>ATCG00170.1 | Symbols: RPOC2 | RNA polymerase beta' subunit-2 |
           chrC:15938-20068 REVERSE
          Length = 1376

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 62/86 (72%), Gaps = 7/86 (8%)

Query: 1   LRINLAKSHISYISRKRNDPSGSGPISNNESDRTNINPFYPIYSKTRI-QQSLKQNQGTI 59
           +RI L KSHISYI RKRN+   SG IS +     ++NPFY I  K+ I QQSL+QN GTI
Sbjct: 867 IRIGLVKSHISYI-RKRNNSPDSGLISAD-----HMNPFYSISPKSGILQQSLRQNHGTI 920

Query: 60  STLLNRNKECQSLIILSSSNCFRMDP 85
              LNRNKE QSL+ILSSSNCFRM P
Sbjct: 921 RMFLNRNKESQSLLILSSSNCFRMGP 946