Jatropha Genome Database

JcCB0133481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133481.10 - phase: 0 
         (251 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61730.1 | Symbols:  | DNA-binding storekeeper protein-relate...    56   2e-08
AT4G00390.1 | Symbols:  | transcription regulator | chr4:171650-...    54   1e-07
AT1G11510.1 | Symbols:  | DNA-binding storekeeper protein-relate...    50   1e-06
AT5G14280.1 | Symbols:  | DNA-binding storekeeper protein-relate...    49   2e-06

>AT1G61730.1 | Symbols:  | DNA-binding storekeeper protein-related |
           chr1:22793447-22794577 REVERSE
          Length = 376

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 8/98 (8%)

Query: 63  KPKQSNRLWNNEDETVLLSAMINLGIKSGDSNNVDR--LYDHVIKDLHCTTVSKSQLTEK 120
           KP    RLW+ EDE ++L  MI+    +G S  VD    YD + K +    VSK+Q  +K
Sbjct: 151 KPGGFQRLWSEEDEILVLQGMIDFKADTGKSPYVDTNAFYDFLKKSISF-EVSKNQFMDK 209

Query: 121 VHRLRKKYKKNLVRGGRD--SLSGKHEIELFDLCHQLW 156
           +  LRKKY   + + GR+  S    H+ + F+L   +W
Sbjct: 210 IRSLRKKY---IGKEGRNEPSFVKAHDKKAFELSKFIW 244


>AT4G00390.1 | Symbols:  | transcription regulator |
           chr4:171650-172744 REVERSE
          Length = 364

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 8/98 (8%)

Query: 63  KPKQSNRLWNNEDETVLLSAMINLGIKSGDSNNVDR--LYDHVIKDLHCTTVSKSQLTEK 120
           KP    RLW+++DE  +L  MI+    +G S + D    Y+   K +    VSKSQ ++K
Sbjct: 153 KPALFQRLWSDDDEISMLQGMIDYHADTGKSPSADTNAFYEFQKKSISF-EVSKSQFSDK 211

Query: 121 VHRLRKKYKKNLVRGGRDS--LSGKHEIELFDLCHQLW 156
           V  LRKKY+    + G+D       H+ + F+L   +W
Sbjct: 212 VRSLRKKYR---AKEGKDEPRFVKAHDKKAFELSKFIW 246


>AT1G11510.1 | Symbols:  | DNA-binding storekeeper protein-related |
           chr1:3871778-3872836 REVERSE
          Length = 352

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 5/91 (5%)

Query: 69  RLWNNEDETVLLSAMINLGIKSGDSNNVDRLYDHVIKDLHCTTVSKSQLTEKVHRLRKKY 128
           RLW  +DE V+L  +I+    +G SN  +++Y+ V K +    VSK+QL EK+  L+KKY
Sbjct: 140 RLWTEDDEIVVLQGLIDDKKDTGVSN-TNKVYELVKKSISFD-VSKNQLMEKLRALKKKY 197

Query: 129 KKNLVR---GGRDSLSGKHEIELFDLCHQLW 156
           + NL +   G   +    H+ + F+L   +W
Sbjct: 198 ENNLGKAKDGVEPTFVKPHDRKAFELSKLVW 228


>AT5G14280.1 | Symbols:  | DNA-binding storekeeper protein-related |
           chr5:4609123-4611444 FORWARD
          Length = 572

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 67  SNRLWNNEDETVLLSAMINLGIKSGDSNNV--DRLYDHVIKDLHCTTVSKSQLTEKVHRL 124
           SNR+WN EDE  +L  +++   K+G  + +  D  Y +V   +H   VSK QL  K  +L
Sbjct: 61  SNRIWNEEDELSILKGLVDFRAKTGLESKIDWDAFYCYVKGSIH-VKVSKCQLMSKTRKL 119

Query: 125 RKKY---KKNLVRGGRDSLSGKHEIELFDLCHQLWEK 158
           +KK+    + + +G     +   E E F     +W K
Sbjct: 120 KKKFLDQMEKIDQGNDPHFTRSSETEAFGYSMMIWRK 156