Jatropha Genome Database

JcCB0131991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0131991.10 - phase: 2 /pseudo/partial
         (179 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18230.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   223   7e-59

>AT4G18230.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Oligosaccharide biosynthesis protein Alg14
           like (InterPro:IPR013969); Has 453 Blast hits to 453
           proteins in 176 species: Archae - 4; Bacteria - 199;
           Metazoa - 76; Fungi - 83; Plants - 28; Viruses - 0;
           Other Eukaryotes - 63 (source: NCBI BLink). |
           chr4:10080521-10081710 REVERSE
          Length = 233

 Score =  223 bits (567), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 105/147 (71%), Positives = 125/147 (85%)

Query: 29  MVRIFYVIYRSGKPLRPKSPKPMSTLIVLGSGGHTAEMINVLSVLQKDWFTPRFYIAAAT 88
           MVR+ YVIYR GKPL   + +  +TLIVLGSGGHTAEM+++LSVL+KD FTPRFYIAAAT
Sbjct: 30  MVRVLYVIYRCGKPLPKGASQSFTTLIVLGSGGHTAEMLSLLSVLRKDRFTPRFYIAAAT 89

Query: 89  DNMSLQKARVLEDSLIDTTGDKVVSAKFMQIYRSREVGQSYITSIGTTLIAVAHALCLMI 148
           DNMSLQKAR  EDSL +    K  S++FMQIYRSREVGQSY+TS+ TT++A+ HAL LMI
Sbjct: 90  DNMSLQKARSFEDSLAEKPAVKEASSQFMQIYRSREVGQSYVTSVWTTIVAILHALWLMI 149

Query: 149 KIRPQVILCNGPGTCVPLCIIAY*FKV 175
           +IRPQVILCNGPGTC+PLC+IA+ FKV
Sbjct: 150 RIRPQVILCNGPGTCIPLCVIAFLFKV 176