Jatropha Genome Database

JcCB0130751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0130751.20 + phase: 0 /partial
         (155 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03210.1 | Symbols:  | phenazine biosynthesis PhzC/PhzF famil...   149   8e-37
AT4G02860.1 | Symbols:  | catalytic | chr4:1268952-1270508 REVERSE    148   1e-36
AT4G02850.1 | Symbols:  | phenazine biosynthesis PhzC/PhzF famil...   125   8e-30

>AT1G03210.1 | Symbols:  | phenazine biosynthesis PhzC/PhzF family
           protein | chr1:782948-784240 FORWARD
          Length = 286

 Score =  149 bits (375), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 90/122 (73%), Gaps = 7/122 (5%)

Query: 34  LSFYQVDAFTDSAFMGNPAAVCLLED--EKNEKWLQAVATEFNLSETCYLTRITDGETVS 91
           + ++ VDAF +SAF GNPAAVC LED  E+++ WLQ++ATEFN+SETC+LT I     + 
Sbjct: 7   VKYFIVDAFAESAFKGNPAAVCFLEDDNERDDAWLQSLATEFNISETCFLTPI-----IG 61

Query: 92  SNPRFHLRWFTPVAEIRLCGHATLAASHILFSNGWVNSSTIEFVTLSGFLIAKKVTEISN 151
             PRF LRWFTPVAE+ LCGHATLA++H+LFS G V S T+EF TLSG L AK +    +
Sbjct: 62  DLPRFRLRWFTPVAEVDLCGHATLASAHVLFSTGLVGSETVEFDTLSGILTAKHLKNDDD 121

Query: 152 RE 153
            E
Sbjct: 122 GE 123


>AT4G02860.1 | Symbols:  | catalytic | chr4:1268952-1270508 REVERSE
          Length = 313

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/130 (56%), Positives = 95/130 (73%), Gaps = 10/130 (7%)

Query: 31  ESSLSFYQVDAFTDSAFMGNPAAVCLLED--EKNEKWLQAVATEFNLSETCYLTRITDGE 88
           +  + ++ VDAFTDSAF GNPAAVC L D  E+++ WLQ++A EFN+SETC+L  IT  +
Sbjct: 23  KKGVKYFVVDAFTDSAFKGNPAAVCFLNDDNERDDTWLQSLAAEFNISETCFLIPITGFQ 82

Query: 89  TVSSNPRFHLRWFTPVAEIRLCGHATLAASHILFSNGWVNSSTIEFVTLSGFLIAKKV-- 146
                 RF LRWFTP+AE+ LCGHATLA++H LFSNG V+S  +EFVT SG L AK+V  
Sbjct: 83  A-----RFSLRWFTPLAEVDLCGHATLASAHCLFSNGLVDSDMVEFVTRSGILTAKRVSD 137

Query: 147 -TEISNREAK 155
            +E+S+ E K
Sbjct: 138 TSELSDGEVK 147


>AT4G02850.1 | Symbols:  | phenazine biosynthesis PhzC/PhzF family
           protein | chr4:1266535-1268569 REVERSE
          Length = 306

 Score =  125 bits (315), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 89/124 (71%), Gaps = 7/124 (5%)

Query: 34  LSFYQVDAFTDSAFMGNPAAVCLLED--EKNEKWLQAVATEFNLSETCYLTRITDGETVS 91
           + ++ VDAFT+SAF GN AAVC LE+  E+++ WLQ++A+EF+L  TC+L  I   E   
Sbjct: 9   VKYFMVDAFTESAFKGNQAAVCFLEEDHERDDVWLQSMASEFDLPLTCFLIPIPGSEP-- 66

Query: 92  SNPRFHLRWFTPVAEIRLCGHATLAASHILFSNGWVNSS-TIEFVTLSGFLIAKKVTEIS 150
             PRF LRWFT VAE+ +CGHATLA++H +FSN  V SS T+EF T SG L AK++++  
Sbjct: 67  --PRFLLRWFTAVAEMDICGHATLASAHSIFSNSLVGSSDTVEFSTNSGILTAKRLSDCD 124

Query: 151 NREA 154
           ++ +
Sbjct: 125 SKRS 128