Jatropha Genome Database

JcCB0130701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0130701.10 - phase: 0 /partial
         (272 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24820.2 | Symbols:  | 26S proteasome regulatory subunit, put...   452   e-128
AT4G24820.1 | Symbols:  | 26S proteasome regulatory subunit, put...   452   e-128

>AT4G24820.2 | Symbols:  | 26S proteasome regulatory subunit,
           putative (RPN7) | chr4:12790471-12792599 REVERSE
          Length = 387

 Score =  452 bits (1164), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/270 (80%), Positives = 241/270 (89%)

Query: 3   GQEGTQQPHLVLAHKRFLLTHPDVQDIEKVRLKEEVFAAVKDDDMAPLYETLMAEGILDK 62
           G EG+QQPHL+LA+K FLLTHPDV DIEKV+LK EV   ++   MAPLYETL+A  +LD 
Sbjct: 4   GAEGSQQPHLILANKLFLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDL 63

Query: 63  DQSVLDSMRAXXXXXXXXXXXXIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEQMK 122
           DQS+L+SMRA            IADAEENLGESEVREAHLAK+L+FIRI DKEKALEQ+K
Sbjct: 64  DQSLLESMRAANEEELKKLDEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLK 123

Query: 123 VTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEG 182
           +TE KTVAVGQKMD+VFYTLQL FFYMDFDL+SKSIDKAK LFEEGGDWERKNRLKVYEG
Sbjct: 124 LTEGKTVAVGQKMDVVFYTLQLAFFYMDFDLVSKSIDKAKKLFEEGGDWERKNRLKVYEG 183

Query: 183 LYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPE 242
           LYCMSTRNFKKAA+LFLDSISTFTTYE+FPY+TFIFYTVLTSII+LDRVSLKQKVVDAPE
Sbjct: 184 LYCMSTRNFKKAASLFLDSISTFTTYEIFPYETFIFYTVLTSIITLDRVSLKQKVVDAPE 243

Query: 243 ILTVIGKIPYLSEFLNSLYECQYKSFFSAF 272
           ILTV+GKIP+LSEFLNSLYECQYK+FFSAF
Sbjct: 244 ILTVLGKIPFLSEFLNSLYECQYKAFFSAF 273


>AT4G24820.1 | Symbols:  | 26S proteasome regulatory subunit,
           putative (RPN7) | chr4:12790471-12792599 REVERSE
          Length = 387

 Score =  452 bits (1164), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/270 (80%), Positives = 241/270 (89%)

Query: 3   GQEGTQQPHLVLAHKRFLLTHPDVQDIEKVRLKEEVFAAVKDDDMAPLYETLMAEGILDK 62
           G EG+QQPHL+LA+K FLLTHPDV DIEKV+LK EV   ++   MAPLYETL+A  +LD 
Sbjct: 4   GAEGSQQPHLILANKLFLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDL 63

Query: 63  DQSVLDSMRAXXXXXXXXXXXXIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEQMK 122
           DQS+L+SMRA            IADAEENLGESEVREAHLAK+L+FIRI DKEKALEQ+K
Sbjct: 64  DQSLLESMRAANEEELKKLDEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLK 123

Query: 123 VTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEG 182
           +TE KTVAVGQKMD+VFYTLQL FFYMDFDL+SKSIDKAK LFEEGGDWERKNRLKVYEG
Sbjct: 124 LTEGKTVAVGQKMDVVFYTLQLAFFYMDFDLVSKSIDKAKKLFEEGGDWERKNRLKVYEG 183

Query: 183 LYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPE 242
           LYCMSTRNFKKAA+LFLDSISTFTTYE+FPY+TFIFYTVLTSII+LDRVSLKQKVVDAPE
Sbjct: 184 LYCMSTRNFKKAASLFLDSISTFTTYEIFPYETFIFYTVLTSIITLDRVSLKQKVVDAPE 243

Query: 243 ILTVIGKIPYLSEFLNSLYECQYKSFFSAF 272
           ILTV+GKIP+LSEFLNSLYECQYK+FFSAF
Sbjct: 244 ILTVLGKIPFLSEFLNSLYECQYKAFFSAF 273