Jatropha Genome Database

JcCB0130451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0130451.10 + phase: 0 /TE/pseudo/partial
         (421 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   155   5e-38
ATMG00810.1 | Symbols: ORF240B | hypothetical protein | chrM:227...   129   3e-30
ATMG00820.1 | Symbols: ORF170 | hypothetical protein | chrM:2285...   111   8e-25
ATMG00240.1 | Symbols: ORF111A | hypothetical protein | chrM:689...    71   1e-12

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  155 bits (392), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 102/139 (73%), Gaps = 1/139 (0%)

Query: 111 PKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKKAIGCKWVFTVKVNPDGSVTR 170
           P T  +A     WC AM +E+ A++T  TW++  LP +KK IGCKWV+ +K N DG++ R
Sbjct: 86  PSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIER 145

Query: 171 LKARLVAKGYSQIYGLDYSDTFSTVAKLSFVRLFISIAATFDWPLHQLDVKNAFLHGDLX 230
            KARLVAKGY+Q  G+D+ +TFS V KL+ V+L ++I+A +++ LHQLD+ NAFL+GDL 
Sbjct: 146 YKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLD 205

Query: 231 EEVYMEQPLGFVA-QGESI 248
           EE+YM+ P G+ A QG+S+
Sbjct: 206 EEIYMKLPPGYAARQGDSL 224



 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 248 IKEIGKLGTKPCSALMTPNLQLSI-DGELFDDPEMYRRLVGKLNYLTVTRPDIAYSMSVL 306
           + E G LG KP S  M P++  S   G  F D + YRRL+G+L YL +TR DI+++++ L
Sbjct: 343 LDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKL 402

Query: 307 NQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAGLKVNRRSTSG 366
           +QF  +P + H +A+ +I  Y+KG  G GL YS+   + ++ FS A +   K  RRST+G
Sbjct: 403 SQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNG 462

Query: 367 YCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
           YC+F+  +LISW+SKKQ V S+SS ++EYRA
Sbjct: 463 YCMFLGTSLISWKSKKQQVVSKSSAEAEYRA 493


>ATMG00810.1 | Symbols: ORF240B | hypothetical protein |
           chrM:227709-228431 REVERSE
          Length = 240

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 106/176 (60%), Gaps = 6/176 (3%)

Query: 241 FVAQGESIKEI----GKLGTKPCSALMTPNLQLSIDGELFDDPEMYRRLVGKLNYLTVTR 296
           F++Q +  ++I    G L  KP S  +   L  S+    + DP  +R +VG L YLT+TR
Sbjct: 55  FLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTR 114

Query: 297 PDIAYSMSVLNQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAG 356
           PDI+Y+++++ Q M  PT+  ++ L ++  Y+KG   HGL    +  L+++ F  +DWAG
Sbjct: 115 PDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAG 174

Query: 357 LKVNRRSTSGYCVFVSGNLISWRSKKQNVFSRSSVKSEYRAWFVLFTHTNLTYNIA 412
               RRST+G+C F+  N+ISW +K+Q   SRSS ++EYRA  +  T   LT++ A
Sbjct: 175 CTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRA--LALTAAELTWSSA 228


>ATMG00820.1 | Symbols: ORF170 | hypothetical protein |
           chrM:228573-229085 REVERSE
          Length = 170

 Score =  111 bits (278), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 80/120 (66%), Gaps = 4/120 (3%)

Query: 93  PQSNLNLPIALRKDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKKAI 152
           P+ +L +   ++K+    PK+V+ AL  PGWC AM+EE+ AL  N TW LVP P ++  +
Sbjct: 14  PKYSLTITTTIKKE----PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNIL 69

Query: 153 GCKWVFTVKVNPDGSVTRLKARLVAKGYSQIYGLDYSDTFSTVAKLSFVRLFISIAATFD 212
           GCKWVF  K++ DG++ RLKARLVAKG+ Q  G+ + +T+S V + + +R  +++A   +
Sbjct: 70  GCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLE 129


>ATMG00240.1 | Symbols: ORF111A | hypothetical protein |
           chrM:68918-69253 REVERSE
          Length = 111

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 50/81 (61%)

Query: 291 YLTVTRPDIAYSMSVLNQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFS 350
           YLT+TRPD+ ++++ L+QF S+      +A+ ++  Y+KG  G GL YS    L ++ F+
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 351 YADWAGLKVNRRSTSGYCVFV 371
            +DWA     RRS +G+C  V
Sbjct: 62  DSDWASCPDTRRSVTGFCSLV 82