Jatropha Genome Database

JcCB0129921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0129921.10 - phase: 2 /TE
         (999 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43760.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    72   2e-12

>AT1G43760.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           RNA-directed DNA polymerase (reverse transcriptase),
           related (InterPro:IPR015706),
           Endonuclease/exonuclease/phosphatase
           (InterPro:IPR005135); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT1G40390.1); Has 2614
           Blast hits to 2551 proteins in 44 species: Archae - 0;
           Bacteria - 0; Metazoa - 1517; Fungi - 2; Plants - 1086;
           Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
           | chr1:16528880-16531065 REVERSE
          Length = 626

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 121/258 (46%), Gaps = 18/258 (6%)

Query: 185 LSDHCP-IILXKNKQDWGSXPFRFIDAWRTFPTFKNLVSL---WWREAPFEANAFVISK- 239
           +SDH P II+ +N        FR+     T PTF  LVSL   W  + P  ++ F + + 
Sbjct: 311 VSDHSPCIIILENLPKRSKKCFRYFSFLSTHPTF--LVSLTVAWEEQIPVGSHMFSLGEH 368

Query: 240 LKFPKSKLKVXNKECFGNIEAEYANMDAKLDAFDRIY-EVRAFSQEELIEYKTLSANFWR 298
           LK  K   K+ N++ FGNI+ +       LD+ + I  ++     + L   + ++   W 
Sbjct: 369 LKAAKKCCKLLNRQGFGNIQHKTKEA---LDSLESIQSQLLTNPSDSLFRVEHVARKKWN 425

Query: 299 T-QKAQDSYWKQVSRIQWGKLGDRNTRLFQVVASKRKTSNYIASLTHNGE-SLSSPSKIK 356
               A +S+++Q SRI+W + GD NTR F  V    +  N I  L  + +  + + +++K
Sbjct: 426 FFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVK 485

Query: 357 FAIFDHYKNFFGS-----TPKGPLNTQGLSLKSLSEADSRSLKTPFTTEEVKIAVWSCVG 411
             I  +Y +  GS     TP      + +     ++  +  L    + +E+  AV++   
Sbjct: 486 EMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPR 545

Query: 412 SKSPGLDGFDFTFFKKLW 429
           +K+PG D F   FF + W
Sbjct: 546 NKAPGPDSFTAEFFWESW 563