Jatropha Genome Database
- JcCB0128761.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0128761.10 - phase: 0
(187 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB E... 254 1e-68
AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABIDOPSIS PSEUDO-R... 117 3e-27
AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS PSEUDO-R... 116 9e-27
AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSE... 113 7e-26
AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE REGUL... 106 7e-24
AT3G16857.2 | Symbols: ARR1 | ARR1 (ARABIDOPSIS RESPONSE REGULAT... 92 2e-19
AT3G16857.1 | Symbols: ARR1 | ARR1 (ARABIDOPSIS RESPONSE REGULAT... 92 2e-19
AT4G16110.1 | Symbols: ARR2 | ARR2 (ARABIDOPSIS RESPONSE REGULAT... 92 2e-19
AT2G25180.1 | Symbols: ARR12 | ARR12 (ARABIDOPSIS RESPONSE REGUL... 89 1e-18
AT4G31920.1 | Symbols: ARR10 | ARR10 (ARABIDOPSIS RESPONSE REGUL... 87 6e-18
AT1G67710.1 | Symbols: ARR11 | ARR11 (RESPONSE REGULATOR 11); tr... 86 2e-17
AT2G01760.1 | Symbols: ARR14 | ARR14 (ARABIDOPSIS RESPONSE REGUL... 75 3e-14
AT5G58080.1 | Symbols: ARR18 | ARR18 (ARABIDOPSIS RESPONSE REGUL... 72 1e-13
AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSE... 68 4e-12
AT3G62670.1 | Symbols: ARR20, MEE41 | ARR20 (ARABIDOPSIS RESPONS... 65 3e-11
AT1G49190.1 | Symbols: ARR19 | ARR19 (ARABIDOPSIS RESPONSE REGUL... 63 1e-10
AT3G57040.1 | Symbols: ARR9, ATRR4 | ARR9 (RESPONSE REGULATOR 9)... 58 3e-09
AT4G18020.5 | Symbols: | APRR2; transcription factor/ two-compo... 56 1e-08
AT4G18020.4 | Symbols: APRR2, PRR2 | APRR2; transcription factor... 56 1e-08
AT4G18020.3 | Symbols: APRR2, PRR2 | APRR2; transcription factor... 56 1e-08
AT4G18020.2 | Symbols: APRR2, PRR2 | APRR2; transcription factor... 56 1e-08
AT4G18020.1 | Symbols: APRR2, PRR2 | APRR2; transcription factor... 56 1e-08
AT2G41310.1 | Symbols: ATRR3, ARR8 | ATRR3 (RESPONSE REGULATOR 3... 56 1e-08
AT1G10470.1 | Symbols: ARR4, MEE7, ATRR1, IBC7 | ARR4 (RESPONSE ... 55 2e-08
AT2G40670.1 | Symbols: ARR16, RR16 | ARR16 (ARABIDOPSIS RESPONSE... 54 4e-08
AT3G48100.1 | Symbols: ARR5, ATRR2, IBC6 | ARR5 (ARABIDOPSIS RES... 52 2e-07
AT1G59940.1 | Symbols: ARR3 | ARR3 (RESPONSE REGULATOR 3); trans... 52 2e-07
AT1G19050.1 | Symbols: ARR7 | ARR7 (RESPONSE REGULATOR 7); trans... 52 2e-07
AT5G49240.1 | Symbols: APRR4, PRR4 | APRR4 (PSEUDO-RESPONSE REGU... 52 3e-07
AT1G74890.1 | Symbols: ARR15 | ARR15 (RESPONSE REGULATOR 15); tr... 50 7e-07
AT5G62920.1 | Symbols: ARR6 | ARR6 (RESPONSE REGULATOR 6); trans... 50 9e-07
AT3G56380.1 | Symbols: ARR17, RR17 | ARR17 (ARABIDOPSIS RESPONSE... 49 2e-06
AT1G68210.1 | Symbols: APRR6, PRR6 | APRR6 (PSEUDO-RESPONSE REGU... 49 2e-06
AT4G00760.1 | Symbols: APRR8, PRR8 | APRR8 (PSEUDO-RESPONSE REGU... 48 3e-06
>AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB
EXPRESSION 1); transcription regulator/ two-component
response regulator | chr5:24675540-24678176 FORWARD
Length = 618
Score = 254 bits (650), Expect = 1e-68, Method: Composition-based stats.
Identities = 118/142 (83%), Positives = 130/142 (91%)
Query: 12 SGCSKSGDGLIDRSKVRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGP 71
+G K GDG IDRS+VRILLCDNDS S EVFTLL +CSYQVT+V+SARQVIDALNAEGP
Sbjct: 4 NGECKGGDGFIDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGP 63
Query: 72 AIDIILAEVDLPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVK 131
IDIILAE+DLPM KGMK+L+YITRDK+LRRIPVIMMS QDEV +VVKCL+LGAADYLVK
Sbjct: 64 DIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVK 123
Query: 132 PLRTNELLNLWTHMWRRRRMVG 153
PLRTNELLNLWTHMWRRRRM+G
Sbjct: 124 PLRTNELLNLWTHMWRRRRMLG 145
>AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 3); transcription regulator/
two-component response regulator |
chr5:24198215-24200502 REVERSE
Length = 495
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 78/122 (63%)
Query: 27 VRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNK 86
+++LL +ND + V LL CSY+VT+V + L E ID++L EVD+P++
Sbjct: 64 LKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHS 123
Query: 87 GMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 146
G LL I K L+ IPVIMMS+ D + +V KCL GA D+LVKP+R NEL NLW H+W
Sbjct: 124 GTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHVW 183
Query: 147 RR 148
RR
Sbjct: 184 RR 185
>AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 5); transcription regulator/
two-component response regulator | chr5:8356204-8358873
REVERSE
Length = 667
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 78/123 (63%)
Query: 27 VRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNK 86
+R+LL + D + + + LL KCSY+V +V + + L + ++D+IL EVDLP
Sbjct: 159 LRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPESVDLILTEVDLPSIS 218
Query: 87 GMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 146
G LL I + IPVIMMS QD V+ V KC+ GAADYLVKPLR NEL NLW H+W
Sbjct: 219 GYALLTLIMEHDICKNIPVIMMSTQDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQHVW 278
Query: 147 RRR 149
RR+
Sbjct: 279 RRQ 281
>AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding /
transcription regulator/ two-component response
regulator | chr2:19232874-19234901 FORWARD
Length = 468
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 78/122 (63%)
Query: 27 VRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNK 86
+R+LL ++D + + + LL KC Y+V +V + L + ID+IL E+DLP
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSIS 96
Query: 87 GMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 146
G LL + + + IPVIMMS+QD + +V+KC+ GAADYL+KP+R NEL NLW H+W
Sbjct: 97 GFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVW 156
Query: 147 RR 148
RR
Sbjct: 157 RR 158
>AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE
REGULATOR 7); transcription regulator/ two-component
response regulator | chr5:638283-641461 REVERSE
Length = 727
Score = 106 bits (265), Expect = 7e-24, Method: Composition-based stats.
Identities = 56/122 (45%), Positives = 71/122 (58%)
Query: 27 VRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNK 86
+R+LL +ND + V LL CSY+V + Q L IDI+L EV +P
Sbjct: 78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLS 137
Query: 87 GMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 146
G+ LL I K R IPVIMMS+ D + +V KCL GA D+LVKP+R NEL LW H+W
Sbjct: 138 GIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVW 197
Query: 147 RR 148
RR
Sbjct: 198 RR 199
>AT3G16857.2 | Symbols: ARR1 | ARR1 (ARABIDOPSIS RESPONSE REGULATOR
1); transcription factor/ two-component response
regulator | chr3:5756113-5759139 FORWARD
Length = 690
Score = 92.0 bits (227), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 25 SKVRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPM 84
S +R+L+ D+D + +L C Y+VT A + L DI++++V +P
Sbjct: 35 SGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPD 94
Query: 85 NKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTH 144
G KLL+++ + +L PVIMMSA D S+V+K + GA DYL+KP+R L N+W H
Sbjct: 95 MDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQH 151
Query: 145 MWRRRR 150
+ R+RR
Sbjct: 152 VVRKRR 157
>AT3G16857.1 | Symbols: ARR1 | ARR1 (ARABIDOPSIS RESPONSE REGULATOR
1); transcription factor/ two-component response
regulator | chr3:5756113-5758853 FORWARD
Length = 669
Score = 92.0 bits (227), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 25 SKVRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPM 84
S +R+L+ D+D + +L C Y+VT A + L DI++++V +P
Sbjct: 35 SGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPD 94
Query: 85 NKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTH 144
G KLL+++ + +L PVIMMSA D S+V+K + GA DYL+KP+R L N+W H
Sbjct: 95 MDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQH 151
Query: 145 MWRRRR 150
+ R+RR
Sbjct: 152 VVRKRR 157
>AT4G16110.1 | Symbols: ARR2 | ARR2 (ARABIDOPSIS RESPONSE REGULATOR
2); transcription factor/ two-component response
regulator | chr4:9112979-9115785 FORWARD
Length = 664
Score = 92.0 bits (227), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 3/126 (2%)
Query: 25 SKVRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPM 84
+ +R+L+ D+D + +L+ C Y+VT A + L DI++++V +P
Sbjct: 26 ANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPD 85
Query: 85 NKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTH 144
G KLL+++ + +L PVIMMSA D S+V+K + GA DYL+KP+R L N+W H
Sbjct: 86 MDGFKLLEHVGLEMDL---PVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQH 142
Query: 145 MWRRRR 150
+ R++R
Sbjct: 143 VVRKKR 148
>AT2G25180.1 | Symbols: ARR12 | ARR12 (ARABIDOPSIS RESPONSE
REGULATOR 12); transcription factor/ two-component
response regulator | chr2:10724490-10726961 REVERSE
Length = 596
Score = 89.4 bits (220), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 27 VRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNK 86
+R+L D+D + + +LL C Y VT+ A++ ++ L D+++++VD+P
Sbjct: 17 MRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMD 76
Query: 87 GMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 146
G KLL+ + + +L PVIM+SA + V+K + GA DYL+KP+R EL N+W H+
Sbjct: 77 GFKLLELVGLEMDL---PVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVV 133
Query: 147 RRR 149
R R
Sbjct: 134 RSR 136
>AT4G31920.1 | Symbols: ARR10 | ARR10 (ARABIDOPSIS RESPONSE
REGULATOR 10); transcription factor/ two-component
response regulator | chr4:15444290-15446766 REVERSE
Length = 552
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 27 VRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNK 86
+R+L D+D + TLL +C Y VT+ A+ ++ L D+++++VD+P
Sbjct: 17 MRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMD 76
Query: 87 GMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 146
G KLL+ + + +L PVIM+SA + V+K ++ GA DYL+KP+R EL N+W H+
Sbjct: 77 GFKLLELVGLEMDL---PVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVV 133
Query: 147 R 147
R
Sbjct: 134 R 134
>AT1G67710.1 | Symbols: ARR11 | ARR11 (RESPONSE REGULATOR 11);
transcription factor/ two-component response regulator |
chr1:25376994-25378905 REVERSE
Length = 521
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
Query: 27 VRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNK 86
+R+L+ D+D + + +L KCSY+VT+ AR+ + L DI++++V++P
Sbjct: 11 LRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMD 70
Query: 87 GMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 146
G KLL+++ + +L PVIMMS E S V+K ++ GA DYL+KP+R EL +W H+
Sbjct: 71 GFKLLEHVGLELDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 147 RRR 149
R++
Sbjct: 128 RKK 130
>AT2G01760.1 | Symbols: ARR14 | ARR14 (ARABIDOPSIS RESPONSE
REGULATOR 14); transcription factor/ two-component
response regulator | chr2:333041-334514 FORWARD
Length = 382
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 25 SKVRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPM 84
S +RIL+ D+D+ + +LL+ YQVT A + L + D++L++V +P
Sbjct: 9 SGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPG 68
Query: 85 NKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTH 144
G LL+ + + +PVIMMS + V+ + GA DYL+KP+R EL N+W H
Sbjct: 69 MNGYNLLQQVGLLE--MDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQH 126
Query: 145 MWRRR 149
+ RR+
Sbjct: 127 VVRRK 131
>AT5G58080.1 | Symbols: ARR18 | ARR18 (ARABIDOPSIS RESPONSE
REGULATOR 18); transcription factor/ two-component
response regulator | chr5:23501785-23504099 REVERSE
Length = 618
Score = 72.4 bits (176), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 27 VRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNK 86
+R+L D++ ++ LLL+C Y VT +R+ ++ L D+++++V++P
Sbjct: 1 MRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMFDLVISDVEMPDTD 60
Query: 87 GMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 146
G KLL+ I + +L PVIM+SA + V+K + GA DYLVKP+ EL N+W H+
Sbjct: 61 GFKLLE-IGLEMDL---PVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWHHVV 116
Query: 147 RR 148
++
Sbjct: 117 KK 118
>AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding /
transcription regulator/ two-component response
regulator | chr2:19233422-19234901 FORWARD
Length = 351
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 34/41 (82%)
Query: 108 MSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 148
MS+QD + +V+KC+ GAADYL+KP+R NEL NLW H+WRR
Sbjct: 1 MSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRR 41
>AT3G62670.1 | Symbols: ARR20, MEE41 | ARR20 (ARABIDOPSIS RESPONSE
REGULATOR 20); transcription factor/ two-component
response regulator | chr3:23176556-23178294 REVERSE
Length = 426
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 28 RILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNKG 87
R+LL DS S + L+ + SYQVT S + + L ID+++ + +P G
Sbjct: 42 RVLLVGADSNSS--LKNLMTQYSYQVTKYESGEEAMAFLMKNKHEIDLVIWDFHMPDING 99
Query: 88 MKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 147
+ L I + +L PV++MS + + V++ ++ GA D+LVKP+ + LW H++R
Sbjct: 100 LDALNIIGKQMDL---PVVIMSHEYKKETVMESIKYGACDFLVKPVSKEVIAVLWRHVYR 156
Query: 148 RR 149
+R
Sbjct: 157 KR 158
>AT1G49190.1 | Symbols: ARR19 | ARR19 (ARABIDOPSIS RESPONSE
REGULATOR 19); transcription factor/ two-component
response regulator | chr1:18191342-18193598 FORWARD
Length = 608
Score = 63.2 bits (152), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 29 ILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNKGM 88
+L+ D + + + ++ + +YQV+ A + + L + I+I++ + +P G+
Sbjct: 36 VLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFLTSCKHEINIVIWDFHMPGIDGL 95
Query: 89 KLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 148
+ LK IT +L PV++MS ++ V+K GA DY+VKP++ + N+W H+ R+
Sbjct: 96 QALKSITSKLDL---PVVIMSDDNQTESVMKATFYGACDYVVKPVKEEVMANIWQHIVRK 152
Query: 149 R 149
R
Sbjct: 153 R 153
>AT3G57040.1 | Symbols: ARR9, ATRR4 | ARR9 (RESPONSE REGULATOR 9);
transcription regulator/ two-component response
regulator | chr3:21110059-21111228 FORWARD
Length = 234
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 20 GLIDRSKVRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSA---------RQVIDA----- 65
G+ S+ +L D+ + + LL K S QVT+V S RQ D+
Sbjct: 2 GMAAESQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNA 61
Query: 66 -----LNAEGPAIDIILAEVDLPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKC 120
+N + +++I+ + +P G LLK + R IPV++MS+++ + + +C
Sbjct: 62 FSKAPVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRC 121
Query: 121 LRLGAADYLVKPLRTNELLNLWTHMWRRR 149
L GA ++ +KP+R +L L HM + +
Sbjct: 122 LEEGAEEFFLKPVRLADLNKLKPHMMKTK 150
>AT4G18020.5 | Symbols: | APRR2; transcription factor/
two-component response regulator |
chr4:10003991-10006682 REVERSE
Length = 487
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 26 KVRILL----CDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVD 81
KV +LL D D S E + L Y VT+ + + A+ + I + EV+
Sbjct: 19 KVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFHIAIVEVN 78
Query: 82 LPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNL 141
M+ + K++ K++ +P IM+S ++ +KC+ LGA ++L KPL +L N+
Sbjct: 79 --MSAESESFKFLEAAKDV--LPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNI 134
Query: 142 WTHM 145
W H+
Sbjct: 135 WQHV 138
>AT4G18020.4 | Symbols: APRR2, PRR2 | APRR2; transcription factor/
two-component response regulator |
chr4:10003991-10006682 REVERSE
Length = 487
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 26 KVRILL----CDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVD 81
KV +LL D D S E + L Y VT+ + + A+ + I + EV+
Sbjct: 19 KVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFHIAIVEVN 78
Query: 82 LPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNL 141
M+ + K++ K++ +P IM+S ++ +KC+ LGA ++L KPL +L N+
Sbjct: 79 --MSAESESFKFLEAAKDV--LPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNI 134
Query: 142 WTHM 145
W H+
Sbjct: 135 WQHV 138
>AT4G18020.3 | Symbols: APRR2, PRR2 | APRR2; transcription factor/
two-component response regulator |
chr4:10003738-10006682 REVERSE
Length = 535
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 26 KVRILL----CDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVD 81
KV +LL D D S E + L Y VT+ + + A+ + I + EV+
Sbjct: 19 KVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFHIAIVEVN 78
Query: 82 LPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNL 141
M+ + K++ K++ +P IM+S ++ +KC+ LGA ++L KPL +L N+
Sbjct: 79 --MSAESESFKFLEAAKDV--LPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNI 134
Query: 142 WTHM 145
W H+
Sbjct: 135 WQHV 138
>AT4G18020.2 | Symbols: APRR2, PRR2 | APRR2; transcription factor/
two-component response regulator |
chr4:10003738-10006682 REVERSE
Length = 535
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 26 KVRILL----CDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVD 81
KV +LL D D S E + L Y VT+ + + A+ + I + EV+
Sbjct: 19 KVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFHIAIVEVN 78
Query: 82 LPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNL 141
M+ + K++ K++ +P IM+S ++ +KC+ LGA ++L KPL +L N+
Sbjct: 79 --MSAESESFKFLEAAKDV--LPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNI 134
Query: 142 WTHM 145
W H+
Sbjct: 135 WQHV 138
>AT4G18020.1 | Symbols: APRR2, PRR2 | APRR2; transcription factor/
two-component response regulator |
chr4:10003738-10006682 REVERSE
Length = 535
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 26 KVRILL----CDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVD 81
KV +LL D D S E + L Y VT+ + + A+ + I + EV+
Sbjct: 19 KVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFHIAIVEVN 78
Query: 82 LPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNL 141
M+ + K++ K++ +P IM+S ++ +KC+ LGA ++L KPL +L N+
Sbjct: 79 --MSAESESFKFLEAAKDV--LPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNI 134
Query: 142 WTHM 145
W H+
Sbjct: 135 WQHV 138
>AT2G41310.1 | Symbols: ATRR3, ARR8 | ATRR3 (RESPONSE REGULATOR 3);
transcription regulator/ two-component response
regulator | chr2:17222280-17223536 FORWARD
Length = 225
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 25 SKVRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALN-----------AEGPAI 73
SK +L D+ + + LL K S QVT+V S + ++ L + P I
Sbjct: 7 SKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQI 66
Query: 74 ------DIILAEVDLPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAAD 127
++I+ + +P G LLK + R IPV++MS+++ + + +CL GA +
Sbjct: 67 HQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEE 126
Query: 128 YLVKPLRTNELLNLWTHMWRRR 149
+ +KP++ +L L HM + +
Sbjct: 127 FFLKPVKLADLTKLKPHMMKTK 148
>AT1G10470.1 | Symbols: ARR4, MEE7, ATRR1, IBC7 | ARR4 (RESPONSE
REGULATOR 4); protein binding / transcription regulator/
two-component response regulator | chr1:3442624-3443759
REVERSE
Length = 259
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 22 IDRSKVRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDAL---NAEGPA------ 72
+D +V +L D+ + LL S +VT+V S + ++ L N + A
Sbjct: 29 LDLDEVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKASAEFDRLK 88
Query: 73 IDIILAEVDLPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKP 132
+D+I+ + +P G +LLK I R +PV++MS+++ ++ + +CL GA D+L+KP
Sbjct: 89 VDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKP 148
Query: 133 LRTNELLNLWTHMWR 147
++ ++ L +H+ +
Sbjct: 149 VKLADVKRLRSHLTK 163
>AT2G40670.1 | Symbols: ARR16, RR16 | ARR16 (ARABIDOPSIS RESPONSE
REGULATOR 16); transcription regulator/ two-component
response regulator | chr2:16970258-16971120 FORWARD
Length = 164
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 19 DGLIDRSKVRILLCDNDSKSCEEVFTL--LLKCSYQVTSVRSARQVIDALNAEGPAIDII 76
D LIDR V LL SC +V T L+ + + + Q IDAL + +I
Sbjct: 36 DNLIDRKLVERLL----KISCCKVTTAENALR-ALEYLGLGDQNQHIDALTCNVMKVSLI 90
Query: 77 LAEVDLPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTN 136
+ + +P G +LLK + LR +PV++MS+++ + + KCL GA ++ KPL+
Sbjct: 91 ITDYCMPGMTGFELLKKVKESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQKPLKLA 150
Query: 137 ELLNLWTHMWRRR 149
++ L H+ R
Sbjct: 151 DVEKLKCHLMNCR 163
>AT3G48100.1 | Symbols: ARR5, ATRR2, IBC6 | ARR5 (ARABIDOPSIS
RESPONSE REGULATOR 5); transcription regulator/
two-component response regulator |
chr3:17759112-17760740 REVERSE
Length = 184
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 45 LLLKCSYQVTSVRSARQVIDALNAEGP----------AIDIILAEVDLPMNKGMKLLKYI 94
LL S +VT V SA + + L +G I++I+ + +P G +LLK I
Sbjct: 43 LLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKINLIMTDYSMPGMTGYELLKKI 102
Query: 95 TRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLR 134
R IPV++MS+++ + + +CL GA D+L+KP++
Sbjct: 103 KESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVK 142
>AT1G59940.1 | Symbols: ARR3 | ARR3 (RESPONSE REGULATOR 3);
transcription regulator/ two-component response
regulator | chr1:22065894-22066895 REVERSE
Length = 231
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 48/75 (64%)
Query: 73 IDIILAEVDLPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKP 132
+D+I+ + +P G +LLK I + +PV++MS+++ ++ + +CL GA D+L+KP
Sbjct: 88 VDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKP 147
Query: 133 LRTNELLNLWTHMWR 147
++ ++ L +++ R
Sbjct: 148 VKLADVKRLRSYLTR 162
>AT1G19050.1 | Symbols: ARR7 | ARR7 (RESPONSE REGULATOR 7);
transcription regulator/ two-component response
regulator | chr1:6577919-6579078 REVERSE
Length = 206
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 18 GDGLIDRSKVRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPA----- 72
GD + ++ +L D+ + + LL S +VT+V S + + L +G
Sbjct: 15 GDLTVTTPELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNL 74
Query: 73 ----IDIILAEVDLPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADY 128
+++I+ + +P G LLK I R +PV++MS+++ + + +CL+ GA ++
Sbjct: 75 KDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEF 134
Query: 129 LVKPLR 134
L+KP++
Sbjct: 135 LLKPVK 140
>AT5G49240.1 | Symbols: APRR4, PRR4 | APRR4 (PSEUDO-RESPONSE
REGULATOR 4); transcription factor/ two-component
response regulator | chr5:19962934-19964351 FORWARD
Length = 292
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 27 VRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNK 86
+R+L+ D D + L K YQVT + + L D+ + +V+
Sbjct: 42 LRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGD 101
Query: 87 GMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 146
+ L I + +L P+I++S D V V K + GAADYL+KP+R +L ++ H+
Sbjct: 102 IFRFLSEIGSEMDL---PIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLV 158
Query: 147 RRRR 150
++ R
Sbjct: 159 KKMR 162
>AT1G74890.1 | Symbols: ARR15 | ARR15 (RESPONSE REGULATOR 15);
transcription regulator/ two-component response
regulator | chr1:28131590-28132710 REVERSE
Length = 206
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 30 LLCDNDSKSCEEVFTLLLKCSY-QVTSVRSARQVIDALNAEGP---------AIDIILAE 79
+L +DS +V LLK S +VT+V S + + L +G +++I+ +
Sbjct: 20 VLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLKDLKVNLIVTD 79
Query: 80 VDLPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELL 139
+P G +LLK I LR IPV++MS+++ + +C+ GA ++L+KP++ ++
Sbjct: 80 YSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKPVKLADVK 139
Query: 140 NLWTHMWR 147
L + R
Sbjct: 140 RLKELIMR 147
>AT5G62920.1 | Symbols: ARR6 | ARR6 (RESPONSE REGULATOR 6);
transcription regulator/ two-component response
regulator | chr5:25252745-25254158 REVERSE
Length = 186
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 27 VRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNA---------EGPAIDIIL 77
+ +L D+ + + LL S +VT V SA + + L E +++I+
Sbjct: 25 LHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKVNLIM 84
Query: 78 AEVDLPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNE 137
+ +P G +LLK I R +PV++MS+++ + + +CL GA D+L+KP++ ++
Sbjct: 85 TDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLSD 144
Query: 138 LLNLWTHMWR 147
+ L + +
Sbjct: 145 VKRLRDSLMK 154
>AT3G56380.1 | Symbols: ARR17, RR17 | ARR17 (ARABIDOPSIS RESPONSE
REGULATOR 17); transcription regulator/ two-component
response regulator | chr3:20905480-20906368 FORWARD
Length = 153
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 14/154 (9%)
Query: 8 MNKESGCSKSGDGLID--RSKVRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDA 65
MNK GC D + ++ +L D++ + V +L S +VT+ + + ++
Sbjct: 1 MNK--GCGSGSDSCLSSMEEELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEY 58
Query: 66 LNAEGPA----------IDIILAEVDLPMNKGMKLLKYITRDKELRRIPVIMMSAQDEVS 115
L P +++I+ + +P G +LLK + L+ +PV+++S+++ +
Sbjct: 59 LGLGDPQQTDSLTNVMKVNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPT 118
Query: 116 IVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 149
+ KCL GA ++ KPL+ +++ L H+ R
Sbjct: 119 RINKCLASGAQMFMQKPLKLSDVEKLKCHLLNCR 152
>AT1G68210.1 | Symbols: APRR6, PRR6 | APRR6 (PSEUDO-RESPONSE
REGULATOR 6); transcription regulator/ two-component
response regulator | chr1:25565983-25569302 FORWARD
Length = 755
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 27 VRILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDLPMNK 86
+ ILL D+D+ S + ++L + S +V SV A + + + + I +I+A +++P
Sbjct: 13 ISILLIDHDTASIASLTSMLQQFSKRVMSVDVASKALSMIEKQKKEIGLIIANIEMPHID 72
Query: 87 GMKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 146
L + L+ IP+I+++ + + L A L KP+ +++ N+W H++
Sbjct: 73 SHSFLNALL----LKDIPLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKNMWQHVF 128
Query: 147 RRR 149
++
Sbjct: 129 SKK 131
>AT4G00760.1 | Symbols: APRR8, PRR8 | APRR8 (PSEUDO-RESPONSE
REGULATOR 8); transcription regulator/ two-component
response regulator | chr4:327236-329048 REVERSE
Length = 367
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 29 ILLCDNDSKSCEEVFTLLLKCSYQVTSVRSARQVIDALNAEGPAIDIILAEVDL-PMNKG 87
+LL D+D+ + ++ KC Y+V + A + +N + ID++LAE L MNK
Sbjct: 16 VLLLDSDATCLANLSEMIRKCGYKVVATTRADDLPLIINNKDKKIDLVLAEFRLIEMNK- 74
Query: 88 MKLLKYITRDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 147
+LL+ I + + IPV++ A + +I V+CL GA L KPL N+ LW
Sbjct: 75 YELLEKI---RSICEIPVVVSGAHVKDAI-VECLCRGAKLCLEKPLMENDFKILWQFTVS 130
Query: 148 RRR 150
R+R
Sbjct: 131 RQR 133