Jatropha Genome Database
- JcCB0128551.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0128551.10 + phase: 0 /pseudo/partial
(257 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXPR... 216 1e-56
AT1G80810.1 | Symbols: | binding | chr1:30365575-30368898 FORWARD 197 5e-51
AT1G80810.2 | Symbols: | binding | chr1:30365575-30368898 FORWARD 197 5e-51
AT1G15940.1 | Symbols: | binding | chr1:5473672-5478050 FORWARD 186 2e-47
AT5G47690.3 | Symbols: | binding | chr5:19317899-19327014 FORWARD 135 2e-32
AT5G47690.2 | Symbols: | binding | chr5:19317899-19327014 FORWARD 135 2e-32
AT5G47690.1 | Symbols: | binding | chr5:19317899-19327014 FORWARD 135 2e-32
AT1G77600.1 | Symbols: | binding | chr1:29152890-29162156 REVERSE 97 1e-20
>AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match
is: binding (TAIR:AT1G15940.1); Has 114836 Blast hits to
56273 proteins in 1914 species: Archae - 187; Bacteria -
15478; Metazoa - 53116; Fungi - 16017; Plants - 4342;
Viruses - 719; Other Eukaryotes - 24977 (source: NCBI
BLink). | chr4:15419435-15423939 REVERSE
Length = 873
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/242 (46%), Positives = 164/242 (67%), Gaps = 6/242 (2%)
Query: 1 RLEVSLSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNA 60
+L VSL++V QSP SM AL+P LV KL +HSD DVKV+VA CISEI RITAP+A
Sbjct: 35 KLFVSLAEVEQSPPDSMQNALTPLMKGLVGGKLFKHSDVDVKVAVAACISEITRITAPDA 94
Query: 61 PYGDEQMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDM 120
PY D+QMKEVF LI++ F+ L SS Y+K +S+L T+A +R+ VVM+DLEC +L+++M
Sbjct: 95 PYDDDQMKEVFKLIVSSFEDLVDKSSRSYAKRISILETVAKVRSCVVMLDLECDALLIEM 154
Query: 121 FHLFLRVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKL 180
F FL+ R + S V S+M + MT+ + ES++I E+L P+L SV+K+++ + S +L
Sbjct: 155 FQHFLKAIRDHHSGNVFSSMENIMTLVLEESEDIPSEMLSPILHSVKKDDE-ISQVSRRL 213
Query: 181 GKEVIGNCAAKIQPYVLKAVNSLGVSVDSYDEVIASICRNA-----TDNVKSFYAPDSEK 235
++V+ NCA+K++ Y+ +AV S GV +D Y ++ASIC D V + DS+
Sbjct: 214 AEQVLSNCASKLKTYLTEAVKSSGVPLDKYSNIVASICEGTFSALQQDQVVANEKEDSQG 273
Query: 236 HL 237
H+
Sbjct: 274 HI 275
>AT1G80810.1 | Symbols: | binding | chr1:30365575-30368898 FORWARD
Length = 773
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 140/203 (68%)
Query: 17 MIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYGDEQMKEVFHLILA 76
M +AL PSRNALVS LL H D+DV+VSV C++EI+RITAP PY D+ MKE+F L +
Sbjct: 1 MQSALIPSRNALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIE 60
Query: 77 VFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHLFLRVTRSNSSDVV 136
F+KL+ SS Y K VL +A +++ +VM+DLEC+ LI+ MF F + RS+ +V
Sbjct: 61 AFEKLADASSRSYKKAEFVLDNVAKVKSCLVMLDLECYDLILQMFRNFFKFIRSDHPQLV 120
Query: 137 LSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKEVIGNCAAKIQPYV 196
S+M M I E++++S ++L LLA+V+KENQNV SW L ++V+ CA K++PY+
Sbjct: 121 FSSMELIMIAIIDETEQVSTDLLDSLLATVKKENQNVSPMSWSLAEKVLSRCARKLKPYI 180
Query: 197 LKAVNSLGVSVDSYDEVIASICR 219
++A+ S G S+D Y V++SIC+
Sbjct: 181 IEALKSRGTSLDMYSPVVSSICQ 203
>AT1G80810.2 | Symbols: | binding | chr1:30365575-30368898 FORWARD
Length = 774
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 140/203 (68%)
Query: 17 MIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYGDEQMKEVFHLILA 76
M +AL PSRNALVS LL H D+DV+VSV C++EI+RITAP PY D+ MKE+F L +
Sbjct: 1 MQSALIPSRNALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIE 60
Query: 77 VFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHLFLRVTRSNSSDVV 136
F+KL+ SS Y K VL +A +++ +VM+DLEC+ LI+ MF F + RS+ +V
Sbjct: 61 AFEKLADASSRSYKKAEFVLDNVAKVKSCLVMLDLECYDLILQMFRNFFKFIRSDHPQLV 120
Query: 137 LSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKEVIGNCAAKIQPYV 196
S+M M I E++++S ++L LLA+V+KENQNV SW L ++V+ CA K++PY+
Sbjct: 121 FSSMELIMIAIIDETEQVSTDLLDSLLATVKKENQNVSPMSWSLAEKVLSRCARKLKPYI 180
Query: 197 LKAVNSLGVSVDSYDEVIASICR 219
++A+ S G S+D Y V++SIC+
Sbjct: 181 IEALKSRGTSLDMYSPVVSSICQ 203
>AT1G15940.1 | Symbols: | binding | chr1:5473672-5478050 FORWARD
Length = 990
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 148/218 (67%)
Query: 2 LEVSLSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAP 61
+E L+ V Q S+S+ AL P ALVS LLR+ D+DV+VSV C++EIMRITAP AP
Sbjct: 40 MESLLATVEQDLSSSVQKALHPPMRALVSADLLRNPDSDVRVSVVSCLTEIMRITAPEAP 99
Query: 62 YGDEQMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMF 121
Y DEQMK++F + + F+KL+ SS Y K +L T+A +R+ +VM+DLEC L+++MF
Sbjct: 100 YNDEQMKDIFQVTIEAFEKLADASSRSYRKAEVILETVAKVRSSLVMLDLECDDLVLEMF 159
Query: 122 HLFLRVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLG 181
FL++ R + +VL +M + M I ES+E+ +++L LL +V+K++Q+V + L
Sbjct: 160 QRFLKIIRPDHPQLVLVSMETIMITVIDESEEVPMDLLEILLTTVKKDSQDVSPAALTLV 219
Query: 182 KEVIGNCAAKIQPYVLKAVNSLGVSVDSYDEVIASICR 219
++V+ +C K+QP +++A+ S G S+D Y V++SIC+
Sbjct: 220 EKVLSSCTCKLQPCIMEALKSSGTSLDMYSPVVSSICQ 257
>AT5G47690.3 | Symbols: | binding | chr5:19317899-19327014 FORWARD
Length = 1607
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 121/190 (63%)
Query: 4 VSLSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYG 63
V LS++ QSP +++ ++ P +A++ ++L H D DVK+ VA C+SEI RITAP APY
Sbjct: 35 VCLSELEQSPPPAVLKSIQPFLDAVIKPEILNHQDKDVKLLVASCVSEITRITAPEAPYS 94
Query: 64 DEQMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHL 123
D MK++F LI++ F L+ +S + + V +L T+A R+ VVM+DLEC L+ ++F
Sbjct: 95 DNIMKDIFQLIVSAFAGLNDVSGPSFGRRVLILETVAKYRSCVVMLDLECDDLVKEVFTT 154
Query: 124 FLRVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKE 183
FL V R + ++V S+M + M + + ES+++ +L LL+ + + +V + +L +
Sbjct: 155 FLDVARDDHPEIVFSSMQNIMIVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMK 214
Query: 184 VIGNCAAKIQ 193
VI +CA K++
Sbjct: 215 VIEHCAPKVE 224
>AT5G47690.2 | Symbols: | binding | chr5:19317899-19327014 FORWARD
Length = 1606
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 121/190 (63%)
Query: 4 VSLSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYG 63
V LS++ QSP +++ ++ P +A++ ++L H D DVK+ VA C+SEI RITAP APY
Sbjct: 35 VCLSELEQSPPPAVLKSIQPFLDAVIKPEILNHQDKDVKLLVASCVSEITRITAPEAPYS 94
Query: 64 DEQMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHL 123
D MK++F LI++ F L+ +S + + V +L T+A R+ VVM+DLEC L+ ++F
Sbjct: 95 DNIMKDIFQLIVSAFAGLNDVSGPSFGRRVLILETVAKYRSCVVMLDLECDDLVKEVFTT 154
Query: 124 FLRVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKE 183
FL V R + ++V S+M + M + + ES+++ +L LL+ + + +V + +L +
Sbjct: 155 FLDVARDDHPEIVFSSMQNIMIVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMK 214
Query: 184 VIGNCAAKIQ 193
VI +CA K++
Sbjct: 215 VIEHCAPKVE 224
>AT5G47690.1 | Symbols: | binding | chr5:19317899-19327014 FORWARD
Length = 1605
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 121/190 (63%)
Query: 4 VSLSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYG 63
V LS++ QSP +++ ++ P +A++ ++L H D DVK+ VA C+SEI RITAP APY
Sbjct: 35 VCLSELEQSPPPAVLKSIQPFLDAVIKPEILNHQDKDVKLLVASCVSEITRITAPEAPYS 94
Query: 64 DEQMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHL 123
D MK++F LI++ F L+ +S + + V +L T+A R+ VVM+DLEC L+ ++F
Sbjct: 95 DNIMKDIFQLIVSAFAGLNDVSGPSFGRRVLILETVAKYRSCVVMLDLECDDLVKEVFTT 154
Query: 124 FLRVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKE 183
FL V R + ++V S+M + M + + ES+++ +L LL+ + + +V + +L +
Sbjct: 155 FLDVARDDHPEIVFSSMQNIMIVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMK 214
Query: 184 VIGNCAAKIQ 193
VI +CA K++
Sbjct: 215 VIEHCAPKVE 224
>AT1G77600.1 | Symbols: | binding | chr1:29152890-29162156 REVERSE
Length = 1367
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 126/249 (50%), Gaps = 37/249 (14%)
Query: 5 SLSKVTQSPSAS--------MIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRIT 56
+LSK+ Q PSA+ + A L P + +++ LL++ D DV + V VC+SE+ RI
Sbjct: 37 TLSKIDQ-PSATNKEKGLKLIEAELRPLKKSIIKHALLKNRDNDVSLLVTVCVSELFRIL 95
Query: 57 APNAPYGDEQMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSL 116
AP+ P+ DE ++++F L +A F +LS S +SK +L T++ ++ ++M+D +C L
Sbjct: 96 APHLPFEDEYLRDIFTLFIAEFSELSDTVSPYFSKRAKILETVSRLKFCLLMLDEDCQDL 155
Query: 117 IVDMFHLFLRVTRSNSSDVVLS--AMVSTMTIAILESDEISL------------------ 156
+ +MF++F + R + +++ +M + A + + SL
Sbjct: 156 VHEMFNMFFSLVREHHQQSLINQKSMKTQQRKANTQQTQHSLFNNILAIMSDVLEEEANS 215
Query: 157 EILFPLLASVRKENQNVFSTSWKLGKEVIGNCAAKIQPYVLKAVNSLGVS--------VD 208
+ +L ++ KE ++ S + KL +I CA +++P + + S + D
Sbjct: 216 SFVVVILENLVKEGEDTTSGADKLASSLIERCADRLEPLICSFLTSCFMEKDSIQTNLKD 275
Query: 209 SYDEVIASI 217
SY E+I I
Sbjct: 276 SYHEIIFKI 284