Jatropha Genome Database

JcCB0127031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0127031.10 + phase: 0 
         (197 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69010.1 | Symbols: BIM2 | BIM2 (BES1-interacting Myc-like pr...    65   4e-11
AT5G08130.2 | Symbols: BIM1 | BIM1; DNA binding / protein bindin...    61   4e-10
AT5G08130.3 | Symbols:  | BIM1; DNA binding / protein binding / ...    61   4e-10
AT5G08130.1 | Symbols: BIM1 | BIM1; DNA binding / protein bindin...    61   4e-10
AT5G38860.1 | Symbols: BIM3 | BIM3 (BES1-interacting Myc-like pr...    59   1e-09

>AT1G69010.1 | Symbols: BIM2 | BIM2 (BES1-interacting Myc-like
           protein 2); DNA binding / transcription factor |
           chr1:25941804-25943599 FORWARD
          Length = 311

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 32/185 (17%)

Query: 6   KNHHPPVEALLDHPQGLKNGSA---------HENT-----AILTNVHNSIDSDLGATAVP 51
           +N+H  V++L +HP  + NGS           +NT     AI+      I+SD  A A+ 
Sbjct: 120 RNNHWRVQSLGNHPVAINNGSGPGIPFPGKFEDNTVTSTPAIIAEPQIPIESD-KARAI- 177

Query: 52  FNVQVHSNMFVVGKSGVTTQPVQESVSDAENMEFQLQPQQWHGRPCATECDAPNNTVNGQ 111
             + + S   +  K     QP+   V   +                A EC A ++ +   
Sbjct: 178 TGISIESQPELDDKGLPPLQPILPMVQGEQ----------------ANECPATSDGLGQS 221

Query: 112 EEPMGETGSDSISSTYSQGILDTLTQALQSSGVDLSQTNISVQIDVGKQGSNIVASNSKD 171
            + + E G+ SISS YS  +L +LTQALQ++G+DLSQ  +SVQID+GK+ +  +      
Sbjct: 222 NDLVIEGGTISISSAYSHELLSSLTQALQNAGIDLSQAKLSVQIDLGKRANQGLTHEEPS 281

Query: 172 QENPF 176
            +NP 
Sbjct: 282 SKNPL 286


>AT5G08130.2 | Symbols: BIM1 | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2609571 REVERSE
          Length = 529

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 70/136 (51%), Gaps = 24/136 (17%)

Query: 41  IDSDLGATAVPFNVQVHSNMFVVGKSGVTTQPVQESVSDAENMEFQLQPQQWHGRPCATE 100
           ID    AT  PF + + SN F      +   PV                 Q+H R  ++E
Sbjct: 389 IDHPTTATTSPFPLSIQSNSFF--SPVIAGNPVP----------------QFHARVASSE 430

Query: 101 CDAPNNTVNGQEEPMGET---GSDSISSTYSQGILDTLTQALQSSGVDLSQTNISVQIDV 157
              P+ +   Q+E   E    G+  ISS YSQG++ TL +AL++SGVDL++ +ISV+I++
Sbjct: 431 AVEPSPSSRSQKEEEDEEVLEGNIRISSVYSQGLVKTLREALENSGVDLTKASISVEIEL 490

Query: 158 GKQGSNIVASNSKDQE 173
            KQ S   +S+ KD E
Sbjct: 491 AKQSS---SSSFKDHE 503


>AT5G08130.3 | Symbols:  | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2608652 REVERSE
          Length = 408

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 70/136 (51%), Gaps = 24/136 (17%)

Query: 41  IDSDLGATAVPFNVQVHSNMFVVGKSGVTTQPVQESVSDAENMEFQLQPQQWHGRPCATE 100
           ID    AT  PF + + SN F      +   PV                 Q+H R  ++E
Sbjct: 268 IDHPTTATTSPFPLSIQSNSFF--SPVIAGNPVP----------------QFHARVASSE 309

Query: 101 CDAPNNTVNGQEEPMGET---GSDSISSTYSQGILDTLTQALQSSGVDLSQTNISVQIDV 157
              P+ +   Q+E   E    G+  ISS YSQG++ TL +AL++SGVDL++ +ISV+I++
Sbjct: 310 AVEPSPSSRSQKEEEDEEVLEGNIRISSVYSQGLVKTLREALENSGVDLTKASISVEIEL 369

Query: 158 GKQGSNIVASNSKDQE 173
            KQ S   +S+ KD E
Sbjct: 370 AKQSS---SSSFKDHE 382


>AT5G08130.1 | Symbols: BIM1 | BIM1; DNA binding / protein binding /
           transcription factor | chr5:2606655-2608652 REVERSE
          Length = 409

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 70/136 (51%), Gaps = 24/136 (17%)

Query: 41  IDSDLGATAVPFNVQVHSNMFVVGKSGVTTQPVQESVSDAENMEFQLQPQQWHGRPCATE 100
           ID    AT  PF + + SN F      +   PV                 Q+H R  ++E
Sbjct: 269 IDHPTTATTSPFPLSIQSNSFF--SPVIAGNPVP----------------QFHARVASSE 310

Query: 101 CDAPNNTVNGQEEPMGET---GSDSISSTYSQGILDTLTQALQSSGVDLSQTNISVQIDV 157
              P+ +   Q+E   E    G+  ISS YSQG++ TL +AL++SGVDL++ +ISV+I++
Sbjct: 311 AVEPSPSSRSQKEEEDEEVLEGNIRISSVYSQGLVKTLREALENSGVDLTKASISVEIEL 370

Query: 158 GKQGSNIVASNSKDQE 173
            KQ S   +S+ KD E
Sbjct: 371 AKQSS---SSSFKDHE 383


>AT5G38860.1 | Symbols: BIM3 | BIM3 (BES1-interacting Myc-like
           protein 3); DNA binding / transcription factor |
           chr5:15559083-15560911 FORWARD
          Length = 298

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 20/159 (12%)

Query: 6   KNHHPPVEALLDHPQGLKNGSAHENTA----ILTNVHNSIDSDLGATAVPFNVQVHSNMF 61
           +N H  V    DHPQ +K+ S+++  A     L + +NS++ D+ + AV   +  HS + 
Sbjct: 110 RNSHGSVAEENDHPQIVKSFSSNDKVAASSGFLLDTYNSVNPDIDS-AVSTKIPEHSPVS 168

Query: 62  VVGKSGVTTQPVQESVSDAENMEFQLQPQQWHGRPCATECDAPNNTVNGQEEPMGETGSD 121
            V  S + T+P         +++F +Q   W  +   T C   N   N +     E  S 
Sbjct: 169 AVS-SYLRTEP---------SLQF-VQHDFWQPK---TSCGTINCFTN-ELLTSDEKTSA 213

Query: 122 SISSTYSQGILDTLTQALQSSGVDLSQTNISVQIDVGKQ 160
           S+S+  SQ +L+TLT+AL+SSGV++S+T ISVQ+ + K+
Sbjct: 214 SLSTVCSQRVLNTLTEALKSSGVNMSETMISVQLSLRKR 252