Jatropha Genome Database

JcCB0126561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0126561.10 + phase: 2 /pseudo/partial
         (177 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51160.1 | Symbols: MUR1, MUR_1, GMD2 | MUR1 (MURUS 1); GDP-m...   174   4e-44
AT5G66280.1 | Symbols: GMD1 | GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATAS...   171   3e-43

>AT3G51160.1 | Symbols: MUR1, MUR_1, GMD2 | MUR1 (MURUS 1);
           GDP-mannose 4,6-dehydratase | chr3:19007232-19008353
           REVERSE
          Length = 373

 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 114/203 (56%), Gaps = 46/203 (22%)

Query: 20  PIQLLKTTPFHPKSPYAVLKCVAHWYTVNYHEAYRLFACNRTLFNHEAMQKRCG*FCNKK 79
           P    +TTPFHP+SPYA  KC AHWYTVNY EAY LFACN  LFNHE+ ++       K 
Sbjct: 170 PPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKI 229

Query: 80  SRTI-------------------------------MWW------PRRSRIRWRNWH---- 98
           +R +                               MW       P    +     H    
Sbjct: 230 TRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEE 289

Query: 99  -----LGILALN*KDHVVIDKRYFRPAEVDNLKGDSSNARKVLGWKPKVGFEQLVKTMVD 153
                 G L LN KD+V ID+RYFRPAEVDNL+GD+S A++VLGWKP+VGFE+LVK MVD
Sbjct: 290 FLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVD 349

Query: 154 EDIEFAKREKMLVDVGYMVVRKH 176
           ED+E AKREK+LVD GYM  ++ 
Sbjct: 350 EDLELAKREKVLVDAGYMDAKQQ 372


>AT5G66280.1 | Symbols: GMD1 | GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE
           1); GDP-mannose 4,6-dehydratase/ binding / catalytic/
           coenzyme binding | chr5:26476434-26477519 FORWARD
          Length = 361

 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 112/203 (55%), Gaps = 46/203 (22%)

Query: 20  PIQLLKTTPFHPKSPYAVLKCVAHWYTVNYHEAYRLFACNRTLFNHEAMQKRCG*FCNKK 79
           P    +TTPFHP+SPYA  KC AHWYTVNY EAY L+ACN  LFNHE+ ++       K 
Sbjct: 158 PPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLYACNGILFNHESPRRGENFVTRKI 217

Query: 80  SRTI-------------------------------MWW------PRRSRIRWRNWH---- 98
           +R +                               MW       P    +     H    
Sbjct: 218 TRALGRIKVGLQTKLFLGNIQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEESHTVKE 277

Query: 99  -----LGILALN*KDHVVIDKRYFRPAEVDNLKGDSSNARKVLGWKPKVGFEQLVKTMVD 153
                 G + LN KDHV IDKRYFRP EVDNLKGD+S A+++LGWKPKVGFE+LVK MVD
Sbjct: 278 FLDVSFGYVGLNWKDHVEIDKRYFRPTEVDNLKGDASKAKEMLGWKPKVGFEKLVKMMVD 337

Query: 154 EDIEFAKREKMLVDVGYMVVRKH 176
           ED+E AKREK+L D GYM  ++ 
Sbjct: 338 EDLELAKREKVLADAGYMDAQQQ 360