Jatropha Genome Database

JcCB0125761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125761.10 + phase: 0 /partial
         (209 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34780.1 | Symbols: EMB1611, MEE22 | MEE22 (MATERNAL EFFECT E...   113   7e-26

>AT2G34780.1 | Symbols: EMB1611, MEE22 | MEE22 (MATERNAL EFFECT EMBRYO
            ARREST 22) | chr2:14668653-14673607 FORWARD
          Length = 1297

 Score =  113 bits (283), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 116/244 (47%), Gaps = 57/244 (23%)

Query: 3    IFVNGINLNLSSKPASADQLVAGSIILASLCAALDRIEFICEASYNLLWIQKYD---IDI 59
            + +NG N+ L +K A  DQLVAGS ILA++C ALDRI +ICEAS+ +L   KY      +
Sbjct: 962  VTLNGENVALVNKIALTDQLVAGSAILAAICTALDRIGYICEASFEIL--HKYSHEKTSV 1019

Query: 60   LLAALHVFAYLGGDKFFSMKEYNLTMKVLKSIIIFLEGHXXXXXXXXXXXXXXXXGMKFH 119
            LL  LHVFAY+ G+K     E+ +++ VLK I++FLE                    + H
Sbjct: 1020 LLTILHVFAYIAGEKMVLSSEHGISIAVLKYIVMFLENKHFGTVEGSS---------RLH 1070

Query: 120  PC-GKCPFD--AVSVDMVVSELLEKFQSCALSVSMHQ-------------------HKDN 157
            P   KCPF   + S++ + S+L+E  Q    S ++H+                   HKD 
Sbjct: 1071 PGKNKCPFSDRSSSLEAMASKLMEILQEFTESNTLHKSLTGSLGSSHLEKTEFRPAHKDF 1130

Query: 158  AKQCSSHEED-------------------WEWTCGKIISGLPKILGRPMPDDFXXXXXXL 198
              QC    +                    W+WT   I++ L K+LG P+P +       L
Sbjct: 1131 --QCVLTRDQSINLCDILSLVELIACYTAWDWTSANIVAPLLKMLGMPLPMNLSVAIVSL 1188

Query: 199  IGQV 202
            +GQ+
Sbjct: 1189 LGQL 1192