Jatropha Genome Database

JcCB0125511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125511.20 + phase: 0 /TE/partial
         (1051 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Symbols: ORF145A | hypothetical protein | chrM:896...    73   1e-12
ATMG00710.1 | Symbols: ORF120 | hypothetical protein | chrM:2075...    71   4e-12
AT4G00980.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...    56   1e-07
AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138...    51   5e-06

>ATMG00300.1 | Symbols: ORF145A | hypothetical protein |
           chrM:89617-90054 REVERSE
          Length = 145

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 374 ENFCSTFRNGQWKLTKGSMVIANGKKDPKLYVMHAKLSRDAFNVTED-DSTVELWHKRLG 432
           E  CS    G  K+ KG   I  G +   LY++   +     N+ E       LWH RL 
Sbjct: 21  EASCS---EGVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLA 77

Query: 433 HMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMAVKQNRVAFKISQPSRMKNMLDMVHSDLC 492
           HMS++GM  LVK   L       L+ C DC+  K +RV F   Q +  KN LD VHSDL 
Sbjct: 78  HMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHT-TKNPLDYVHSDLW 136

Query: 493 G 493
           G
Sbjct: 137 G 137


>ATMG00710.1 | Symbols: ORF120 | hypothetical protein |
           chrM:207553-207915 REVERSE
          Length = 120

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 45/71 (63%)

Query: 589 MNRTLMERVRCLLSHAKLSKRFWGEALLTAVHLINRSPCVPLQYDTPERVWSRKDVSYDH 648
           MNRT++E+VR +L    L K F  +A  TAVH+IN+ P   + +  P+ VW +   +Y +
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 649 LRVFGCKAFVH 659
           LR FGC A++H
Sbjct: 61  LRRFGCVAYIH 71


>AT4G00980.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr4:422732-424580 REVERSE
          Length = 488

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 116/291 (39%), Gaps = 42/291 (14%)

Query: 7   KMISLNGVNYHIWRNKMRDLLMVTKMHL------PMFGSSK-PE---------DKTDEEW 50
           K+   +G +Y  W ++M   L   K+        P  GSS+ PE         D T ++W
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKW 253

Query: 51  AFEHEQVCGYIRQFVDDNVYNHICNE-THTRTLWDKLEQLYASKSGNNQLFYLTKLMNFK 109
             +      ++   + D++Y     +  H + LWD+L+ +Y      ++   + K + F+
Sbjct: 254 LRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFR 313

Query: 110 YQEGTSVADHLSEMQATIHQLSNMGIKFDDKILGLMVLASLPESWETL--KISITNSTPH 167
             E   + + +         + + G+  D+      +++  P SW     ++      P 
Sbjct: 314 MVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEEEYLP- 372

Query: 168 SGVSWEFVKNAVLNEEMRRKAQN-----PSSSQSDI----LLVDDKRNNQPRGRSQSRSS 218
               W  ++     EE+ R         P++  S +     L    R +Q  G    R  
Sbjct: 373 ---VWMLMERVKAEEELLRNGAKGVTYRPATGSSQMERTPSLGTTHRGSQSVG--WKRKE 427

Query: 219 NTRDKSRGRSNKFANIVCHHCGKKGHIKRYCRKFKSDQEKIKGKAKKEESS 269
             RD+          IVC +CG+KGH+ ++C   KSD E+  GK+ +  SS
Sbjct: 428 PERDER-------VIIVCDNCGRKGHLAKHCWGSKSD-ERASGKSNRINSS 470


>AT3G21000.1 | Symbols:  | unknown protein | chr3:7363921-7365138
           FORWARD
          Length = 405

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 16/139 (11%)

Query: 236 CHHCGKKGHIKRYCRKFKSDQEKIKGKAKKEESSDDEANVIAEFQLFIENTINLATQ--- 292
           C  C K  H +  C        K +    KEE  D+   ++ +++L  E   NL  +   
Sbjct: 230 CGLCYKNNHNQEDC--------KFRIHTDKEEKEDE---IVVDYRL--ETVPNLGAKTYD 276

Query: 293 ETSWVIDSGATLHATSRRENFSSYTPENLGVVKIADGKLLKVVGKGDICLETENGSRLIL 352
           +  W+I   A ++ T   + F++        V   DG +L V GKGD+ +  + G +  +
Sbjct: 277 DDIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTI 336

Query: 353 KDVVHVPDMHSNLISVGRL 371
           ++V+ VP ++ N++S G++
Sbjct: 337 RNVIFVPGLNRNVLSFGKM 355