Jatropha Genome Database

JcCB0124611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0124611.10 - phase: 0 /TE/partial
         (212 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   105   2e-23
ATMG00820.1 | Symbols: ORF170 | hypothetical protein | chrM:2285...    68   4e-12

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  105 bits (261), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 5/147 (3%)

Query: 17  VLMTDGGEPECFEEAMESEHKRNWIKAMQDEMKSLHENKTFEXXXXXXXXXXXXXXXXWV 76
           V +    EP  + EA E      W  AM DE+ ++    T+E                WV
Sbjct: 78  VCIAKAKEPSTYNEAKEF---LVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCK--WV 132

Query: 77  FRIKQEEHSSQPRFKARLIVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGMAASFDLEIEQ 136
           ++IK     +  R+KARL+ KG+ Q++GIDF E FSPV K+TS++ +L ++A ++  + Q
Sbjct: 133 YKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQ 192

Query: 137 MDVKTAILHGDLEEKIYMEQPEGFIKK 163
           +D+  A L+GDL+E+IYM+ P G+  +
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAAR 219


>ATMG00820.1 | Symbols: ORF170 | hypothetical protein |
           chrM:228573-229085 REVERSE
          Length = 170

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 40  WIKAMQDEMKSLHENKTFEXXXXXXXXXXXXXXXXWVFRIKQEEHSSQPRFKARLIVKGF 99
           W +AMQ+E+ +L  NKT+                 WVF+ K     +  R KARL+ KGF
Sbjct: 40  WCQAMQEELDALSRNKTW--ILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGF 97

Query: 100 NQRKGIDFDEIFSPVVKMTSIRTVLGMAASFDL 132
           +Q +GI F E +SPVV+  +IRT+L +A   ++
Sbjct: 98  HQEEGIYFVETYSPVVRTATIRTILNVAQQLEV 130