Jatropha Genome Database

JcCB0123131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0123131.20 + phase: 0 
         (523 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06540.1 | Symbols:  | GDP dissociation inhibitor family prot...   551   e-157
AT5G09550.1 | Symbols:  | RAB GDP-dissociation inhibitor | chr5:...    99   5e-21
AT2G44100.2 | Symbols: ATGDI1, AT-GDI1 | ATGDI1 (ARABIDOPSIS THA...    89   5e-18
AT2G44100.1 | Symbols: ATGDI1, AT-GDI1 | ATGDI1 (ARABIDOPSIS THA...    89   6e-18
AT3G59920.1 | Symbols: ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INH...    89   1e-17

>AT3G06540.1 | Symbols:  | GDP dissociation inhibitor family protein
           / Rab GTPase activator family protein |
           chr3:2035201-2037662 REVERSE
          Length = 563

 Score =  551 bits (1419), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 292/510 (57%), Positives = 365/510 (71%), Gaps = 17/510 (3%)

Query: 1   MSEPPSYPPIDPTTFDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPD 60
           M + P YPP+DP+ +DLIVVGTG+ ESV+AAAAS+SG SVLHLD N FYGSHF+SLS+PD
Sbjct: 1   MIDIPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPD 60

Query: 61  LXX--XXXXXXXXXXXXXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKF 118
           L                      +N  DF  V+L  R LYS VEISSF +++L+EHS +F
Sbjct: 61  LTSFLHSNSVSPPPSPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRF 120

Query: 119 NLDVSGPRVLFCADKSVNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDK 178
           N+D++GPRV+FCAD+S+NL+LKSGA+ YVEFKSIDASFVGD +G L NVPDSRA+IFKDK
Sbjct: 121 NVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDK 180

Query: 179 SLSLMEKNRLMRFFKLVQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFL 238
           SL+L+EKN+LM+FFKLVQ  LA++                     KIS ED+ESPFV+FL
Sbjct: 181 SLTLLEKNQLMKFFKLVQSHLASSTEKDDSTTV------------KISEEDMESPFVDFL 228

Query: 239 TKMXXXXXXXXXXXYAIAMADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAF 298
           +KM           YAIAM DYDQDN   C+ LLKTK+GIDRLA Y +S+GRF+NALGA 
Sbjct: 229 SKMRLPPKIKSIILYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGAL 288

Query: 299 IYPIYGQGEMPPAFCRRAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLV 358
           IYPIYGQGE+P AFCRRAAVKG IYVLRMP+ ALL+DK +GGYKG+RLASGQ+IFSQKL+
Sbjct: 289 IYPIYGQGELPQAFCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLASGQEIFSQKLI 348

Query: 359 LDPSLTVPSPSASPL-DSPHENFQFLCVRDV--KQKVARGICIIRSSLKPDIANFLVVYP 415
           LDP +TV   S S L D  +E    L  + +  K+K+ARG+C+IR S+K +++N LVVYP
Sbjct: 349 LDPCVTVGLESLSSLTDQQNETLSVLVPKSMINKEKIARGVCVIRGSVKANVSNALVVYP 408

Query: 416 PRSLYPEQMTSIRALQIGGSLAVCPPDTFVLYLSALCDDVHQGKKXXXXXXXXXXTCPDS 475
           P+SL+PEQ+T+IR LQ+G  LAVCP D  VLYLS LCD+  QG K          + P  
Sbjct: 409 PKSLFPEQLTAIRVLQLGSGLAVCPADMHVLYLSTLCDNDDQGIKALLSAMSNLISLPVP 468

Query: 476 GQPETSSLDQTENAVAKPILLWSALYIQEL 505
              ++ S+ + + +  KPILLW ALY+QEL
Sbjct: 469 ENRQSDSVVENDTSETKPILLWRALYVQEL 498


>AT5G09550.1 | Symbols:  | RAB GDP-dissociation inhibitor |
           chr5:2963850-2966465 FORWARD
          Length = 445

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 146/352 (41%), Gaps = 74/352 (21%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +D+IV+GTGL E +++   S  G  VLH+D N +YG   SSL++  L             
Sbjct: 5   YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLTQLWK----------- 53

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNLDVSGPRVLFCADKS 134
                               R   SD    +  A      S ++N+D+  P+ +      
Sbjct: 54  --------------------RFRGSDTPEENLGA------SREYNVDMI-PKFIMANGLL 86

Query: 135 VNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRFFKL 194
           V  L+ +  ++Y+ FK++D SFV  + G ++ VP +     K   + L EK R  +FF  
Sbjct: 87  VQTLIHTDVTKYLNFKAVDGSFVY-KKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIY 145

Query: 195 VQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXXXYA 254
           VQ                            IS   LE   ++F+              +A
Sbjct: 146 VQ-----DYDEKDPKSHEGLDLSKVTAREIISKYGLEDDTIDFI-------------GHA 187

Query: 255 IAMA---DY-DQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPIYGQGEMPP 310
           +A+    DY DQ  I          D + R+  Y  S+ RF      +IYP+YG GE+P 
Sbjct: 188 LALHNDDDYLDQPAI----------DFVKRIKLYAESLARFQGG-SPYIYPLYGLGELPQ 236

Query: 311 AFCRRAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPS 362
           AF R +AV G  Y+L  P   +  D  SG   G+  ++G+    +K+V DPS
Sbjct: 237 AFARLSAVYGGTYMLNKPECKVEFD-GSGKAIGVT-SAGETAKCKKVVCDPS 286


>AT2G44100.2 | Symbols: ATGDI1, AT-GDI1 | ATGDI1 (ARABIDOPSIS
           THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION
           INHIBITOR 1); RAB GDP-dissociation inhibitor |
           chr2:18241804-18244731 FORWARD
          Length = 431

 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 143/348 (41%), Gaps = 66/348 (18%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +++IV+GTGL E +++   S  G  VLH+D N +YG   +SL++  L             
Sbjct: 5   YEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQLWKKF--------- 55

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNLDVSGPRVLFCADKS 134
                     ++ +  +L                      S  +N+D+  P+ +    K 
Sbjct: 56  --------RGEEKAPAHLG--------------------SSRDYNVDMM-PKFMMANGKL 86

Query: 135 VNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRFFKL 194
           V +L+ +  ++Y+ FK++D S+V  + G +  VP +     K   + + EK R  +FF  
Sbjct: 87  VRVLIHTDVTKYLSFKAVDGSYVFVQ-GKVQKVPATPMEALKSPLMGIFEKRRAGKFFSY 145

Query: 195 VQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXXXYA 254
           VQ                           +++ +DL       + K            +A
Sbjct: 146 VQ-----------EYDEKDPKTHDGMDLRRVTTKDL-------IAKFGLKEDTIDFIGHA 187

Query: 255 IAMADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPIYGQGEMPPAFCR 314
           +A+  +  DN           D + R+  Y  S+ RF      +IYP+YG GE+P AF R
Sbjct: 188 VAL--HCNDNHLHQPAY----DTVMRMKLYAESLARFQGG-SPYIYPLYGLGELPQAFAR 240

Query: 315 RAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPS 362
            +AV G  Y+L  P   +  D+  G   G+  + G+    +K+V DPS
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDE-EGKVSGV-TSEGETAKCKKVVCDPS 286


>AT2G44100.1 | Symbols: ATGDI1, AT-GDI1 | ATGDI1 (ARABIDOPSIS
           THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION
           INHIBITOR 1); RAB GDP-dissociation inhibitor |
           chr2:18241804-18244864 FORWARD
          Length = 445

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 142/348 (40%), Gaps = 66/348 (18%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +++IV+GTGL E +++   S  G  VLH+D N +YG   +SL++  L             
Sbjct: 5   YEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQLWKK---------- 54

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNLDVSGPRVLFCADKS 134
                       F     A   L S               S  +N+D+  P+ +    K 
Sbjct: 55  ------------FRGEEKAPAHLGS---------------SRDYNVDMM-PKFMMANGKL 86

Query: 135 VNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRFFKL 194
           V +L+ +  ++Y+ FK++D S+V  + G +  VP +     K   + + EK R  +FF  
Sbjct: 87  VRVLIHTDVTKYLSFKAVDGSYVFVQ-GKVQKVPATPMEALKSPLMGIFEKRRAGKFFSY 145

Query: 195 VQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXXXYA 254
           VQ                           +++ +DL       + K            +A
Sbjct: 146 VQ-----------EYDEKDPKTHDGMDLRRVTTKDL-------IAKFGLKEDTIDFIGHA 187

Query: 255 IAMADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPIYGQGEMPPAFCR 314
           +A+  +  DN           D + R+  Y  S+ RF      +IYP+YG GE+P AF R
Sbjct: 188 VAL--HCNDNHLHQPAY----DTVMRMKLYAESLARFQGG-SPYIYPLYGLGELPQAFAR 240

Query: 315 RAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPS 362
            +AV G  Y+L  P   +  D+  G   G+  + G+    +K+V DPS
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDE-EGKVSGV-TSEGETAKCKKVVCDPS 286


>AT3G59920.1 | Symbols: ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION
           INHIBITOR 2); RAB GDP-dissociation inhibitor |
           chr3:22135157-22138221 FORWARD
          Length = 444

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 140/354 (39%), Gaps = 78/354 (22%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +++IV+GTGL E +++   S  G  VLH+D N +YG   +SL++  L             
Sbjct: 5   YEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLNLNQLWKKFR-------- 56

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEH---SNKFNLDVSGPRVLFCA 131
                                             +   EH   S  +N+D+  P+ +   
Sbjct: 57  --------------------------------GEEKAPEHLGASRDYNVDMM-PKFMMGN 83

Query: 132 DKSVNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRF 191
            K V  L+ +  ++Y+ FK++D S+V    G +  VP +     K   + + EK R  +F
Sbjct: 84  GKLVRTLIHTDVTKYLSFKAVDGSYVF-VKGKVQKVPATPMEALKSSLMGIFEKRRAGKF 142

Query: 192 FKLVQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXX 251
           F  VQ                           +++ ++L       + K           
Sbjct: 143 FSFVQ-----------EYDEKDPKTHDGMDLTRVTTKEL-------IAKYGLDGNTIDFI 184

Query: 252 XYAIAMADYDQ--DNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPIYGQGEMP 309
            +A+A+   DQ  D            D + R+  Y  S+ RF      +IYP+YG GE+P
Sbjct: 185 GHAVALHTNDQHLDQPAF--------DTVMRMKLYAESLARF-QGTSPYIYPLYGLGELP 235

Query: 310 PAFCRRAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLAS-GQDIFSQKLVLDPS 362
            AF R +AV G  Y+L  P   +  D+   G K I + S G+    +K+V DPS
Sbjct: 236 QAFARLSAVYGGTYMLNKPECKVEFDE---GGKVIGVTSEGETAKCKKIVCDPS 286