Jatropha Genome Database

JcCB0123131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0123131.10 + phase: 0 /partial
         (197 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66010.1 | Symbols:  | RNA binding / nucleic acid binding / n...   278   1e-75
AT3G20890.1 | Symbols:  | RNA binding / nucleic acid binding / n...   182   2e-46

>AT5G66010.1 | Symbols:  | RNA binding / nucleic acid binding /
           nucleotide binding | chr5:26399612-26400753 FORWARD
          Length = 255

 Score =  278 bits (711), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/196 (71%), Positives = 171/196 (87%), Gaps = 6/196 (3%)

Query: 5   LTIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGSMQVEFALQRDRQNMGRRYVEVFRCK 64
           + IF+FFAGL+IVDVLLV+KNG+F+GEAFVVFAG MQVE ALQRDR NMGRRYVEVFRC 
Sbjct: 63  IDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFRCS 122

Query: 65  RQDYYNAVAAEVNYEGIYDTDYHGSPPP---SKAKRFSDKEQLEYTEILKMRGLPFSVKK 121
           +QDYYNAVAAE   EG Y+ +   SPPP   S+AKRFS+KE+LEYTE+LKMRGLP+SV K
Sbjct: 123 KQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEVLKMRGLPYSVNK 179

Query: 122 PEIIDFFKEFKLVEERIHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELF 181
           P+II+FF  +K+++ R+ + CRPDGKATGEA+VEF + EEA+RAM+KDKM+IGSRYVELF
Sbjct: 180 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 239

Query: 182 PSTPDEARRAESRSRQ 197
           P+T +EARRAE+RSRQ
Sbjct: 240 PTTREEARRAEARSRQ 255



 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 109 ILKMRGLPFSVKKPEIIDFFKEFKLVEERIHIACRPDGKATGEAYVEFVSAEEAKRAMSK 168
           ++++RGLPF+    +I +FF    +V+    +    +GK +GEA+V F    + + A+ +
Sbjct: 50  VVRLRGLPFNCADIDIFEFFAGLNIVD---VLLVSKNGKFSGEAFVVFAGPMQVEIALQR 106

Query: 169 DKMTIGSRYVELF 181
           D+  +G RYVE+F
Sbjct: 107 DRHNMGRRYVEVF 119


>AT3G20890.1 | Symbols:  | RNA binding / nucleic acid binding /
           nucleotide binding | chr3:7320218-7321054 FORWARD
          Length = 278

 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/227 (44%), Positives = 139/227 (61%), Gaps = 40/227 (17%)

Query: 5   LTIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGSMQVEFALQRDRQNMGRRYVEVFRCK 64
           L + +FF GLD+VDVL V++N + TGEAF V    +QV+FALQ++RQNMGRRYVEVFR  
Sbjct: 57  LDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRST 116

Query: 65  RQDYYNAVAAEVNYEGIYDTDYHGSPPPS------------------------------- 93
           +Q+YY A+A EV      ++  HG                                    
Sbjct: 117 KQEYYKAIANEVA-----ESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRR 171

Query: 94  --KAKRFSD--KEQLEYTEILKMRGLPFSVKKPEIIDFFKEFKLVEERIHIACRPDGKAT 149
             +  R SD  KE +E+T IL++RGLPFS  K +I+DFFK+F+L E+ +H+    +G+ T
Sbjct: 172 HVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPT 231

Query: 150 GEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPSTPDEARRAESRSR 196
           GEA+VEF +AE+++ AM KD+ T+GSRY+ELFPS+ +E   A SR R
Sbjct: 232 GEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 278