Jatropha Genome Database

JcCB0122531.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0122531.20 - phase: 1 /partial
         (136 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12120.1 | Symbols:  | ubiquitin-associated (UBA)/TS-N domain...    55   1e-08
AT2G26920.1 | Symbols:  | ubiquitin-associated (UBA)/TS-N domain...    52   1e-07

>AT5G12120.1 | Symbols:  | ubiquitin-associated (UBA)/TS-N
           domain-containing protein | chr5:3916229-3918088 REVERSE
          Length = 619

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 38  VDWNT-GVMPEFDYNSIDWTLDNNMXXXXXXXXXXXXXXXXXXXXXTRMNSMNSSCI--- 93
           +DWNT G +   DYN+IDW+LD  +                          MN       
Sbjct: 516 LDWNTDGSLGHLDYNNIDWSLDKGLACVRPSQQYVAASSPYSAASSPYEAHMNGRTRMMT 575

Query: 94  --SGLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFV 131
             +G+  A   +E +      EWTSPF GKD+FSL RQ+V
Sbjct: 576 NGNGMGVAMGVQEAALVGNGREWTSPFEGKDLFSLSRQYV 615


>AT2G26920.1 | Symbols:  | ubiquitin-associated (UBA)/TS-N
           domain-containing protein | chr2:11489648-11491588
           FORWARD
          Length = 646

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 38  VDWNTGVMPEFDYNSIDWTLDNNMXXXXXXXXXXXXXXXXXXXXXTRMN--SMNSSCISG 95
           +DW +G     DY +IDW+LD ++                       MN  S+N S    
Sbjct: 539 IDWISG--GSVDYTNIDWSLDQSLSQNSRVNGNWSGLKSSSQIYDENMNRYSLNGSMGGR 596

Query: 96  LRD----------AGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSPS 135
           L +          AG   ET  +A   +WTSPF GKDIFSL RQ+V SPS
Sbjct: 597 LNNSNGVSMENSGAGVIVETQQAATSPDWTSPFEGKDIFSLSRQYV-SPS 645