Jatropha Genome Database

JcCB0122521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0122521.10 - phase: 0 
         (519 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G02950.1 | Symbols: PKS1 | PKS1 (PHYTOCHROME KINASE SUBSTRATE...   180   2e-45
AT1G14280.1 | Symbols: PKS2 | PKS2 (PHYTOCHROME KINASE SUBSTRATE...   172   3e-43
AT1G18810.1 | Symbols:  | phytochrome kinase substrate-related |...    61   2e-09

>AT2G02950.1 | Symbols: PKS1 | PKS1 (PHYTOCHROME KINASE SUBSTRATE
           1); protein binding | chr2:855149-856468 REVERSE
          Length = 439

 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 223/469 (47%), Gaps = 121/469 (25%)

Query: 68  KKVAEDGEIGVFSAEKYFNGVIDEDSPRITKIIPRKYQQPKKEEISNDHIVPAKPAVNIQ 127
           KK  ED EIGVF AEKYFNG  D DS + + ++      P+ E    D    AK +    
Sbjct: 75  KKAPEDPEIGVFGAEKYFNG--DMDSDQGSSVL--SLTNPEVERTVVDSKQSAKKST--- 127

Query: 128 PATPKVNIQPATPSVVSESSRHSQTALLHN---------FVQRKTSS---RKANKSGRNF 175
                      TPSV SESS +SQ+ LL N         F ++K S+   +K   + ++F
Sbjct: 128 ----------GTPSVRSESSWNSQSVLLQNKLVNSCNSSFKEKKNSNGQIQKVTNNKKSF 177

Query: 176 LAGLGCKCYCSDKDSIDVDDEHVGEISFKKSPNPAALFQGKSVITKPVIKTSLDELDQTS 235
           LA LGCKC CSD DS+DV+++     S K+S +P       SVIT   +++S D      
Sbjct: 178 LANLGCKCACSDGDSVDVEEK----TSVKRSADPNI-----SVIT---MRSSAD------ 219

Query: 236 LSDEIHSKNGIKKDTCXXXXXXXXXXXXXXXVRFQIQEKQVLKPRKSLEVFGSPVNDDKR 295
           ++ E+                             +IQ+++ L  RKSLEVFGSPV  +K 
Sbjct: 220 MNTEL----------------------------IKIQKQEELSQRKSLEVFGSPVAIEK- 250

Query: 296 SKSFRIERRLSMLSWDTTKNPKMEEIDYSATSGGGIYNDNESDASSDLFEIESLSGKVTP 355
            KS  ++++L +  W +    + EE D   T   G      SD+SSDLFEIE L+G   P
Sbjct: 251 -KSSVVQKKLPLPPWKS----RTEEDD---TKSEG------SDSSSDLFEIEGLTGNPKP 296

Query: 356 YLARQKSDVTSGCVTPTTCYAPSEASIEWSVVTASAADFSAMSD-----YEEFRPPPGPL 410
           +L RQ SD  S      TCYAPSE S+EWS+VTASAADFS MS+         RP   P 
Sbjct: 297 FLTRQGSDPAS-----PTCYAPSEVSVEWSIVTASAADFSVMSECATSPVRRNRPTQIPR 351

Query: 411 SPIKTFAINNNLNTRFLSSKEIIPTCRPGIFLGCNSHKAVRVAGDGYTPNDKTNFDPRVM 470
            PI   +            K    +   G  + C SHK+V V+GD     D+ +   +  
Sbjct: 352 IPITAKSAPQR-------RKSSSSSGGNGFLMSCKSHKSVMVSGDL----DRRSSMNKTQ 400

Query: 471 HSYMPVAKCPAETKLLMGFDHRQRQHGFTSSHSLPRSHPSQSSHLLYIQ 519
            SY+P  + P ET     F+ R+R    + SH+         S LLY Q
Sbjct: 401 PSYVP--RFPMETTKPKSFETRRRISNSSISHT--------QSSLLYSQ 439


>AT1G14280.1 | Symbols: PKS2 | PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)
           | chr1:4877657-4878985 FORWARD
          Length = 442

 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 209/450 (46%), Gaps = 127/450 (28%)

Query: 68  KKVAEDGEIGVFSAEKYFNGVIDED-SPRITKIIPRKYQQPKKEEISNDHIVPAKPAVNI 126
           KK +ED EI VF AEKYFNG +D D SPR+   +P             D  VP +  + +
Sbjct: 67  KKASEDLEISVFGAEKYFNGDMDSDHSPRLVSPLP-------------DPEVPIE-RIFV 112

Query: 127 QPATPKVNIQPATPSVVSESSRHSQTALLHN------------------FVQRKTSSRKA 168
            P     N    TPS+ SESS +SQ+ LL +                  F ++  SS   
Sbjct: 113 GPKQSSKN-SSETPSLRSESSWNSQSLLLQSKYVEKKKNIKKNSSCNSYFQEKDMSSNHK 171

Query: 169 NKSGRNFLAGLGCKCYCSDKDSIDVDDEHVGEISFKKSPNPAALFQGKSVITKPVIKTSL 228
             + ++FLA LGC+C CS+  S+DV D+       KK                  IKT  
Sbjct: 172 VSNKKSFLATLGCRCVCSNWSSVDVVDDKRRSSGLKK------------------IKT-- 211

Query: 229 DELDQTSLSDEIHSKNGIKKDTCXXXXXXXXXXXXXXXVRFQIQEKQVLKPRKSLEVFGS 288
               Q S S ++ S+  I                       Q Q++ +L+ RKSLE+FGS
Sbjct: 212 ----QLSFSGDLSSEMKIH----------------------QQQQEAMLEQRKSLEIFGS 245

Query: 289 PVNDDKRSKSFRIERRL--SMLSWDTTKNPKMEE----IDYSATSGGGIYNDNESDASSD 342
           P+          IE+R+      W+ + + K EE    + Y     G +     SD S+D
Sbjct: 246 PL----------IEKRIIQKKFPWEYSSSAKKEEHGFSVKYEEEEDGSV-----SDVSTD 290

Query: 343 LFEIESLSGKVTPYLARQKS---DVTSGCVTPTTCYAPSEASIEWSVVTASAADFSAMSD 399
           LFEIESL+GK  P+LARQ S   D   G       YAPSE SI+WSVVTAS ADFS MS+
Sbjct: 291 LFEIESLTGKANPFLARQGSSDPDSPDG-------YAPSEVSIQWSVVTASVADFSVMSE 343

Query: 400 YEEFRPPPGPLSPIKTFAINNNLNTRFLSSKEIIPTCR----PGIFLGCNSHKAVRVAGD 455
                    P+   ++F I   +     S++EI P  R     G+ +GC SHK+VRV+GD
Sbjct: 344 CAT-----SPVKKNRSFQI-PRIPIMAKSNREIAPQRRKSSSSGLLMGCKSHKSVRVSGD 397

Query: 456 GYTPNDKT-NFDPRVMHSYMPVAKCPAETK 484
            YT  ++T ++ PR      PV   P  T+
Sbjct: 398 SYTSMNRTPSYVPR-----FPVEANPTSTE 422


>AT1G18810.1 | Symbols:  | phytochrome kinase substrate-related |
           chr1:6485709-6486872 REVERSE
          Length = 387

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 74/165 (44%), Gaps = 46/165 (27%)

Query: 298 SFRIERRLSMLSWDTTKN---PKMEEIDYSATSGGGIYNDNESD----ASSDLFEIESLS 350
           +  +ER+LS+L+WD   N    K    + +  +     N  E +    ASSDLFEIE+++
Sbjct: 223 AMNLERKLSLLTWDAIPNQLSTKNNNHNNNGNNSSMSSNTQEEETASVASSDLFEIENIT 282

Query: 351 GKVTPYLARQKSDVTSGCVTPTTCYAPSEASIEWSVVTASAADFSAMSDYEEFR--PPPG 408
             V                     Y PSEASI WSVVT S AD S +SD++  +     G
Sbjct: 283 SSV---------------------YEPSEASIGWSVVTGSMADQSVISDFDMMKRVTRNG 321

Query: 409 PLSPIKTFAINNNLNTRFLSSKEIIPTCRPGIFL-GCNSHKAVRV 452
           P+  +KT  +             I    R   FL GC SHKAV V
Sbjct: 322 PV--VKTKPV-------------IGEKVRSAGFLSGCKSHKAVSV 351