Jatropha Genome Database

JcCB0121691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0121691.10 + phase: 2 /pseudo
         (489 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14760.1 | Symbols: AO | AO (L-ASPARTATE OXIDASE); L-aspartat...   804   0.0  
AT2G18450.1 | Symbols: SDH1-2 | SDH1-2; succinate dehydrogenase ...   218   7e-57
AT5G66760.1 | Symbols: SDH1-1 | SDH1-1; ATP binding / succinate ...   217   2e-56

>AT5G14760.1 | Symbols: AO | AO (L-ASPARTATE OXIDASE); L-aspartate
           oxidase/ electron carrier/ oxidoreductase |
           chr5:4769133-4772012 FORWARD
          Length = 651

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/484 (82%), Positives = 432/484 (89%), Gaps = 8/484 (1%)

Query: 9   SRSHGVSKILQIQKCNCSQFTIGEHWRSLR-MRPVSVSSCLRDGSTRYFDFVVIGSGVAG 67
           S S GV K L+ ++C C    I     + + +R VSVSS     ST+Y+DF VIGSGVAG
Sbjct: 42  SWSSGVFKALKAERCGCYSRGISPISETSKPIRAVSVSS-----STKYYDFTVIGSGVAG 96

Query: 68  LRYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPLDSVESHMQDTIVAGANLCDE 127
           LRYALEVAK GTVAVITK EPHESNTNYAQGGVSAVLCPLDSVESHM+DT+VAGA+LCDE
Sbjct: 97  LRYALEVAKQGTVAVITKDEPHESNTNYAQGGVSAVLCPLDSVESHMRDTMVAGAHLCDE 156

Query: 128 ETVRVVCTEGPDRIRELIAMGAMFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERAL 187
           ETVRVVCTEGP+RIRELIAMGA FDHGEDGNLHLAREGGHSH RIVHAADMTGREIERAL
Sbjct: 157 ETVRVVCTEGPERIRELIAMGASFDHGEDGNLHLAREGGHSHCRIVHAADMTGREIERAL 216

Query: 188 LEAVVNDPKISMFEHHFAIDLLTSQDGLNTVCHGVDTINTESKEVVRFISKVTLLAAGGA 247
           LEAV+NDP IS+F+HHFAIDLLTSQDGLNTVCHGVDT+N ++ EVVRFISKVTLLA+GGA
Sbjct: 217 LEAVLNDPNISVFKHHFAIDLLTSQDGLNTVCHGVDTLNIKTNEVVRFISKVTLLASGGA 276

Query: 248 GHIYPSTTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPIKPNKTRENAFLI 307
           GHIYPSTTNPLVATGDG+AMAHRAQAVISNMEFVQFHPTALADEGLPIK    RENAFLI
Sbjct: 277 GHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKLQTARENAFLI 336

Query: 308 TEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHRPR 367
           TEAVRGDGGILYNLGMERFMP+YDERAELAPRDVVARSIDDQLKKRNEKYVLLDISH+PR
Sbjct: 337 TEAVRGDGGILYNLGMERFMPVYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPR 396

Query: 368 GKILSHFPNIAAECLKYGLDITHQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVAC 427
            KIL+HFPNIA+ECLK+GLDIT QPIPVVPAAHYMCGGVRAGLQGETNV GL+VAGEVAC
Sbjct: 397 EKILAHFPNIASECLKHGLDITRQPIPVVPAAHYMCGGVRAGLQGETNVLGLFVAGEVAC 456

Query: 428 TGLHGANRLASNSLLEALVFARRAVQPSIDHMKSSRLNLSASDCWARPVVPYS--LGRNV 485
           TGLHGANRLASNSLLEALVFARRAVQPS + MK +RL++ AS+ W RPVV  +  LG  V
Sbjct: 457 TGLHGANRLASNSLLEALVFARRAVQPSTELMKRTRLDVCASEKWTRPVVATARLLGDEV 516

Query: 486 MDNI 489
           +  I
Sbjct: 517 IAKI 520


>AT2G18450.1 | Symbols: SDH1-2 | SDH1-2; succinate dehydrogenase |
           chr2:7997510-8000801 REVERSE
          Length = 632

 Score =  218 bits (555), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 147/404 (36%), Positives = 204/404 (50%), Gaps = 44/404 (10%)

Query: 74  VAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPLDSVESHMQDTIVAGANLCDEETV 130
           +++HG   A ITK  P  S+T  AQGG++A L    +D    HM DT+     L D++ +
Sbjct: 66  LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSVDDWRWHMYDTVKGSDWLGDQDAI 125

Query: 131 RVVCTEGPDRIRELIAMGAMFDHGEDGNLHLAREGGHS--------HHRIVHAADMTGRE 182
           + +C E P  + EL   G  F   EDG ++    GG S         +R   AAD TG  
Sbjct: 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLEFGIGGQAYRCACAADRTGHA 185

Query: 183 IERALLEAVVNDPKISMFEHHFAIDLLTSQDGLNTVCHGVDTINTESKEVVRFISKVTLL 242
           +   L    +       F  +FA+DL+ + DG    C GV  +N E   + RF +  T+L
Sbjct: 186 LLHTLYGQAMKH-NTQFFVEYFALDLIMNSDG---TCQGVIALNMEDGTLHRFHAGSTIL 241

Query: 243 AAGGAGHIYPSTTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPIKPNKTRE 302
           A GG G  Y S T+    TGDG AM  RA   + ++EFVQFHPT +   G          
Sbjct: 242 ATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGC--------- 292

Query: 303 NAFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKKRN-----EK 356
              LITE  RG+GGIL N   E+FM  Y   A +LA RDVV+RS+  ++++       + 
Sbjct: 293 ---LITEGARGEGGILRNSEGEKFMDRYAPTARDLASRDVVSRSMTMEIRQGRGAGPMKD 349

Query: 357 YVLLDISHRPRGKILSHFPNIAAECLKY-GLDITHQPIPVVPAAHYMCGGVRAGLQGE-- 413
           Y+ L ++H P   +    P I+     + G+D+T +PIPV+P  HY  GG+     GE  
Sbjct: 350 YLYLYLNHLPPEVLKERLPGISETAAIFAGVDVTREPIPVLPTVHYNMGGIPTNYHGEVI 409

Query: 414 --------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 449
                     V GL  AGE AC  +HGANRL +NSLL+ +VF R
Sbjct: 410 TLRGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGR 453


>AT5G66760.1 | Symbols: SDH1-1 | SDH1-1; ATP binding / succinate
           dehydrogenase | chr5:26653776-26657224 FORWARD
          Length = 634

 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 158/460 (34%), Positives = 220/460 (47%), Gaps = 67/460 (14%)

Query: 41  PVSVSSCLRDG--STRYFDFVVIGSGVAGLRYAL---------------------EVAKH 77
           P S +S L DG   +R+  F   GS      Y +                      +++H
Sbjct: 12  PASKTSSLFDGVSGSRFSRFFSTGSTDTRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEH 71

Query: 78  G-TVAVITKAEPHESNTNYAQGGVSAVLCPL--DSVESHMQDTIVAGANLCDEETVRVVC 134
           G   A ITK  P  S+T  AQGG++A L  +  D    HM DT+     L D++ ++ +C
Sbjct: 72  GFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIQYMC 131

Query: 135 TEGPDRIRELIAMGAMFDHGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERA 186
            E P  + EL   G  F   E+G ++    GG S         +R   AAD TG  +   
Sbjct: 132 REAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHT 191

Query: 187 LLEAVVNDPKISMFEHHFAIDLLTSQDGLNTVCHGVDTINTESKEVVRFISKVTLLAAGG 246
           L    +       F  +FA+DLL + DG    C GV  +N E   + RF S  T+LA GG
Sbjct: 192 LYGQAMKH-NTQFFVEYFALDLLMASDG---SCQGVIALNMEDGTLHRFRSSQTILATGG 247

Query: 247 AGHIYPSTTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPIKPNKTRENAFL 306
            G  Y S T+    TGDG AM  RA   + ++EFVQFHPT +   G             L
Sbjct: 248 YGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGC------------L 295

Query: 307 ITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKK-----RNEKYVLL 360
           ITE  RG+GGIL N   ERFM  Y   A +LA RDVV+RS+  ++++      ++ ++ L
Sbjct: 296 ITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPHKDHIYL 355

Query: 361 DISHRPRGKILSHFPNIAAECLKY-GLDITHQPIPVVPAAHYMCGGVRAGLQGE------ 413
            ++H P   +    P I+     + G+D+T +PIPV+P  HY  GG+     GE      
Sbjct: 356 HLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKG 415

Query: 414 ----TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 449
                 + GL  AGE AC  +HGANRL +NSLL+ +VF R
Sbjct: 416 DDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGR 455