Jatropha Genome Database

JcCB0121431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0121431.10 + phase: 0 
         (188 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39530.1 | Symbols:  | integral membrane protein, putative | ...    95   2e-20
AT2G39518.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    95   3e-20

>AT2G39530.1 | Symbols:  | integral membrane protein, putative |
           chr2:16498659-16499401 REVERSE
          Length = 178

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 89/161 (55%), Gaps = 15/161 (9%)

Query: 25  LLTSVIILATDSATFKALLSSQEVTMRLKYIYSYRYMLSAAVIGIAYTFFQLPFAIYHIS 84
           LL +V++++T++ T +  +SS  + +    +Y+YRYMLSAAVIG+ Y   QL   I   +
Sbjct: 28  LLITVVLISTNTVTLE--ISSTSIKLPFNDVYAYRYMLSAAVIGLVYAVVQLFLTISQFA 85

Query: 85  TGKRLIKNVAAIYFDFFSDKVILCFLASGVGAGFGATYDLKENLDQLDDIFKKLGSNLLS 144
           TGK    +     FDF+ DKVI   LA+G  AGFG + DLK+    L +           
Sbjct: 86  TGKT---HPLTYQFDFYGDKVISYLLATGSAAGFGVSKDLKDTYIALIEF---------- 132

Query: 145 EFRTQMDDFFTMGYVSATLLLLGFLCFGVSSLLSFLTLFKR 185
           +    +D FF+ GY SA+LLL  F+   V S+ S L L KR
Sbjct: 133 DSTDPVDKFFSKGYASASLLLFAFVSLAVLSVFSSLALSKR 173


>AT2G39518.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; CONTAINS InterPro DOMAIN/s:
           Uncharacterised protein family UPF0497, trans-membrane
           plant (InterPro:IPR006702), Uncharacterised protein
           family UPF0497, trans-membrane plant subgroup
           (InterPro:IPR006459); BEST Arabidopsis thaliana protein
           match is: integral membrane protein, putative
           (TAIR:AT2G39530.1); Has 80 Blast hits to 80 proteins in
           9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr2:16496029-16496937 REVERSE
          Length = 174

 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 91/171 (53%), Gaps = 31/171 (18%)

Query: 23  LLLLTSVIILATDSATFKALLSSQEVTMRLKY--IYSYRYMLSAAVIGIAYTFFQLPFAI 80
           + L+ ++IIL+T+S T    + SQ   ++  +  +Y+YRYMLSAAVIG+ Y   QL F I
Sbjct: 26  VFLVIALIILSTNSVT----IVSQGSALKFHFKDVYAYRYMLSAAVIGLVYAVIQLFFTI 81

Query: 81  YHISTGKRLIKNVAAIYFDFFSDKVILCFLASGVGAGFGATYDLKEN------LDQLDDI 134
              +TG   +KN      DF+ DK+I   +A+G  AGFG T DLK+       LD  D +
Sbjct: 82  SEFATG---VKNPFNYQLDFYGDKLISYLVATGSAAGFGVTKDLKDTFLALVALDSTDPV 138

Query: 135 FKKLGSNLLSEFRTQMDDFFTMGYVSATLLLLGFLCFGVSSLLSFLTLFKR 185
                           D FF+ GY SA+LLL  F+C  V S+ S   + KR
Sbjct: 139 ----------------DKFFSKGYASASLLLFAFICLAVLSVFSSFAMAKR 173