Jatropha Genome Database

JcCB0121351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0121351.20 + phase: 0 
         (142 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13580.2 | Symbols: LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE H...    56   6e-09
AT1G13580.1 | Symbols: LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE H...    56   8e-09
AT3G25540.1 | Symbols: LAG1 | LAG1 | chr3:9274752-9276261 FORWARD      51   2e-07

>AT1G13580.2 | Symbols: LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE
          HOMOLOG 3) | chr1:4645006-4646765 REVERSE
          Length = 308

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 1  MGFLKTIGFLDWEYESDPTPSDFMIVPFFALFFPLVRLFLDTFIFEP 47
          MG L+++  ++WE+ES P   DF ++P FA+FFP +R  LD F+FE 
Sbjct: 1  MGLLESVKSINWEHESSPVYQDFRVLPLFAVFFPSIRFLLDRFVFEK 47


>AT1G13580.1 | Symbols: LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE
          HOMOLOG 3) | chr1:4645380-4646765 REVERSE
          Length = 239

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 1  MGFLKTIGFLDWEYESDPTPSDFMIVPFFALFFPLVRLFLDTFIFEP 47
          MG L+++  ++WE+ES P   DF ++P FA+FFP +R  LD F+FE 
Sbjct: 1  MGLLESVKSINWEHESSPVYQDFRVLPLFAVFFPSIRFLLDRFVFEK 47


>AT3G25540.1 | Symbols: LAG1 | LAG1 | chr3:9274752-9276261 FORWARD
          Length = 310

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 1  MGFLKTIGFLDWEYESDPTPSDFMIVPFFALFFPLVRLFLDTFIFE 46
          MG  +++  +DWE ES PT  D   +P FA+FFP +R  LD F+FE
Sbjct: 1  MGLFESVKSIDWEQESFPTYQDLGFLPLFAVFFPTIRFLLDRFVFE 46