Jatropha Genome Database

JcCB0120781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0120781.10 + phase: 0 
         (130 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23310.1 | Symbols: FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3); ...   228   1e-60
AT5G51100.1 | Symbols: FSD2 | FSD2 (FE SUPEROXIDE DISMUTASE 2); ...   126   3e-30
AT4G25100.2 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ...   103   2e-23
AT4G25100.3 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ...   103   2e-23
AT4G25100.1 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ...   103   2e-23
AT4G25100.4 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); ...   103   3e-23
AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE SUP...    74   3e-14
AT3G56350.1 | Symbols:  | superoxide dismutase (Mn), putative / ...    71   1e-13
AT3G10920.2 | Symbols: MSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTA...    68   1e-12

>AT5G23310.1 | Symbols: FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3);
           superoxide dismutase | chr5:7850624-7852241 FORWARD
          Length = 263

 Score =  228 bits (580), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 98/130 (75%), Positives = 117/130 (90%)

Query: 1   MQPGGGEMPELGVLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLKREERQLAITKT 60
           MQPGGG+ P+ GVL+QI+KDFGSFTNF+EKF  AALT FGSGW+WLVLKREER+L + KT
Sbjct: 134 MQPGGGDTPQKGVLEQIDKDFGSFTNFREKFTNAALTQFGSGWVWLVLKREERRLEVVKT 193

Query: 61  SNAITPLVWDNIPIICLDMWEHAYYLDYKNDKGSYVNAFMNHLLSWNVAMARMARAEAFV 120
           SNAI PLVWD+IPIIC+D+WEH+YYLDYKND+  Y+N F+NHL+SWN AM+RMARAEAFV
Sbjct: 194 SNAINPLVWDDIPIICVDVWEHSYYLDYKNDRAKYINTFLNHLVSWNAAMSRMARAEAFV 253

Query: 121 NLGDPKIPVA 130
           NLG+P IP+A
Sbjct: 254 NLGEPNIPIA 263


>AT5G51100.1 | Symbols: FSD2 | FSD2 (FE SUPEROXIDE DISMUTASE 2);
           superoxide dismutase | chr5:20773357-20775635 REVERSE
          Length = 305

 Score =  126 bits (317), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 78/131 (59%), Gaps = 15/131 (11%)

Query: 1   MQPGGGEMPELGVLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLK----------- 49
           +QPGGG  P   +L+ IE+DFGSF  F E+F  AA + FGSGW WL  K           
Sbjct: 136 IQPGGGGKPTGELLRLIERDFGSFEEFLERFKSAAASNFGSGWTWLAYKANRLDVANAVN 195

Query: 50  ----REERQLAITKTSNAITPLVWDNIPIICLDMWEHAYYLDYKNDKGSYVNAFMNHLLS 105
                E+++L I KT NA+ PLVWD  P++ +D WEHAYYLD++N +  Y+N FM  L+S
Sbjct: 196 PLPKEEDKKLVIVKTPNAVNPLVWDYSPLLTIDTWEHAYYLDFENRRAEYINTFMEKLVS 255

Query: 106 WNVAMARMARA 116
           W     R+  A
Sbjct: 256 WETVSTRLESA 266


>AT4G25100.2 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
           copper ion binding / superoxide dismutase |
           chr4:12884649-12886501 REVERSE
          Length = 212

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 13  VLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLKREERQLAITKTSNAITPLVWDNI 72
           +L  +E+DF S+  F E+F  AA T FG+GW WL    E  +L + KT NA+ PLV  + 
Sbjct: 106 LLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE--KLKVVKTPNAVNPLVLGSF 163

Query: 73  PIICLDMWEHAYYLDYKNDKGSYVNAFMNHLLSWNVAMARMARAEA 118
           P++ +D+WEHAYYLD++N +  Y+  FM +L+SW    AR+  A+A
Sbjct: 164 PLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209


>AT4G25100.3 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
           copper ion binding / superoxide dismutase |
           chr4:12884649-12886501 REVERSE
          Length = 212

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 13  VLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLKREERQLAITKTSNAITPLVWDNI 72
           +L  +E+DF S+  F E+F  AA T FG+GW WL    E  +L + KT NA+ PLV  + 
Sbjct: 106 LLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE--KLKVVKTPNAVNPLVLGSF 163

Query: 73  PIICLDMWEHAYYLDYKNDKGSYVNAFMNHLLSWNVAMARMARAEA 118
           P++ +D+WEHAYYLD++N +  Y+  FM +L+SW    AR+  A+A
Sbjct: 164 PLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209


>AT4G25100.1 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
           copper ion binding / superoxide dismutase |
           chr4:12884649-12886501 REVERSE
          Length = 212

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 13  VLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLKREERQLAITKTSNAITPLVWDNI 72
           +L  +E+DF S+  F E+F  AA T FG+GW WL    E  +L + KT NA+ PLV  + 
Sbjct: 106 LLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE--KLKVVKTPNAVNPLVLGSF 163

Query: 73  PIICLDMWEHAYYLDYKNDKGSYVNAFMNHLLSWNVAMARMARAEA 118
           P++ +D+WEHAYYLD++N +  Y+  FM +L+SW    AR+  A+A
Sbjct: 164 PLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209


>AT4G25100.4 | Symbols: FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1);
           copper ion binding / superoxide dismutase |
           chr4:12884649-12885660 REVERSE
          Length = 186

 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 13  VLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLKREERQLAITKTSNAITPLVWDNI 72
           +L  +E+DF S+  F E+F  AA T FG+GW WL    E  +L + KT NA+ PLV  + 
Sbjct: 80  LLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE--KLKVVKTPNAVNPLVLGSF 137

Query: 73  PIICLDMWEHAYYLDYKNDKGSYVNAFMNHLLSWNVAMARMARAEA 118
           P++ +D+WEHAYYLD++N +  Y+  FM +L+SW    AR+  A+A
Sbjct: 138 PLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 183


>AT3G10920.1 | Symbols: MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE
           SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide
           dismutase | chr3:3418015-3419581 FORWARD
          Length = 231

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 4/96 (4%)

Query: 4   GGGEMPELGVLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLKREERQLAITKTSNA 63
           GGGE P+  +   I+  FGS     +K       + GSGW+WL L +E ++L +  T+N 
Sbjct: 116 GGGEPPKGSLGSAIDAHFGSLEGLVKKMSAEGAAVQGSGWVWLGLDKELKKLVVDTTANQ 175

Query: 64  ITPLVWDN---IPIICLDMWEHAYYLDYKNDKGSYV 96
             PLV      +P++ +D+WEHAYYL YKN +  Y+
Sbjct: 176 -DPLVTKGGSLVPLVGIDVWEHAYYLQYKNVRPEYL 210


>AT3G56350.1 | Symbols:  | superoxide dismutase (Mn), putative /
           manganese superoxide dismutase, putative |
           chr3:20894155-20895625 REVERSE
          Length = 241

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 1   MQPGGGEMPELGVLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLKREERQLAITKT 60
           +  GGG+ P   +   I+  FGS     +K       + GSGW+W  L RE ++L +  T
Sbjct: 118 VHEGGGKPPHDPLASAIDAHFGSLEGLIQKMNAEGAAVQGSGWVWFGLDRELKRLVVETT 177

Query: 61  SNAITPLVWDN---IPIICLDMWEHAYYLDYKNDKGSYV 96
           +N   PLV      +P+I +D+WEHAYY  YKN +  Y+
Sbjct: 178 ANQ-DPLVTKGSHLVPLIGIDVWEHAYYPQYKNARAEYL 215


>AT3G10920.2 | Symbols: MSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTASE
           1); metal ion binding / superoxide dismutase |
           chr3:3418015-3419581 FORWARD
          Length = 230

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 4   GGGEMPELGVLQQIEKDFGSFTNFKEKFVEAALTLFGSGWIWLVLKREERQLAITKTSNA 63
           GGGE P+  +   I+  FGS     +K       + GSGW WL L +E ++L +  T+N 
Sbjct: 116 GGGEPPKGSLGSAIDAHFGSLEGLVKKMSAEGAAVQGSGW-WLGLDKELKKLVVDTTANQ 174

Query: 64  ITPLVWDN---IPIICLDMWEHAYYLDYKNDKGSYV 96
             PLV      +P++ +D+WEHAYYL YKN +  Y+
Sbjct: 175 -DPLVTKGGSLVPLVGIDVWEHAYYLQYKNVRPEYL 209