Jatropha Genome Database

JcCB0118411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0118411.10 - phase: 1 /TE/partial
         (259 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48720.1 | Symbols:  | unknown protein | chr1:18018148-180184...    65   4e-11

>AT1G48720.1 | Symbols:  | unknown protein |
          chr1:18018148-18018441 FORWARD
          Length = 97

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 48/76 (63%)

Query: 21 HYDHWSELMENLLRAKDLWSLVEKGFTEPLEETRLTEAQQTQLDDDRTKDYQVKHYLFQA 80
          +YD+WS  M+ +L A D+W +VEKGF EP  E  L++ Q+  L D R +D +    ++Q 
Sbjct: 17 NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQG 76

Query: 81 IDRTVFEQILDRRTSK 96
          +D   FE++++  ++K
Sbjct: 77 LDEDTFEKVVEATSAK 92