Jatropha Genome Database

JcCB0118121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0118121.10 + phase: 2 /pseudo/partial
         (645 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08060.2 | Symbols: MOM | MOM (MORPHEUS MOLECULE) | chr1:2501...    75   1e-13
AT1G08060.1 | Symbols: MOM | MOM (MORPHEUS MOLECULE) | chr1:2501...    75   1e-13

>AT1G08060.2 | Symbols: MOM | MOM (MORPHEUS MOLECULE) |
           chr1:2501981-2510488 REVERSE
          Length = 2001

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 7/144 (4%)

Query: 279 KLKVFRLYSRYTVEERALIHAKKSGSNEINVDYMNRDSCYSLLGWGLARLFNKLDDFHQC 338
           + K+FRLYS  TVEE+ALI A+++      V+ +NR   ++LL WG + LF+KLD FH  
Sbjct: 681 RTKIFRLYSVCTVEEKALILARQNKRQNKAVENLNRSLTHALLMWGASYLFDKLDHFHSS 740

Query: 339 KTLASGSKIYSEWPFLDNVLQELLDQLLCNREDEPSI-YSFISKAQQDAGAYTREISVID 397
           +T  SG  +  E   +D V+ E    L     +E  +    + +A+   G Y+ + ++  
Sbjct: 741 ETPDSG--VSFEQSIMDGVIHEFSSILSSKGGEENEVKLCLLLEAKHAQGTYSSDSTLFG 798

Query: 398 EKEVQ--DTGPPALFWDKIFLVGG 419
           E  ++  D   P +FW K  L+GG
Sbjct: 799 EDHIKLSDEESPNIFWSK--LLGG 820



 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 164 SFCYEEYWVPVQLSNVQLEQYCAVLLSNPVLLFKNDTVD--ALREIIISIRK-------- 213
           S  Y EYWVPVQLS+VQLEQYC  L S  + L     +D  AL E + S+RK        
Sbjct: 474 SSVYPEYWVPVQLSDVQLEQYCQTLFSKSLSLSSLSKIDLGALEETLNSVRKTCDHPYVM 533

Query: 214 ----QSVIREGLPAEEYLDAEIQVALDGILLETFWKNLFVKDLVRIVGCGLTVTVEYIVV 269
               + ++ + L   E LD EI+ +  G L      +L  K L  I   GL   V Y   
Sbjct: 534 DASLKQLLTKNLELHEILDVEIKAS--GKL------HLLDKMLTHIKKNGLKAVVFYQAT 585

Query: 270 Q 270
           Q
Sbjct: 586 Q 586


>AT1G08060.1 | Symbols: MOM | MOM (MORPHEUS MOLECULE) |
           chr1:2501981-2510488 REVERSE
          Length = 2001

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 7/144 (4%)

Query: 279 KLKVFRLYSRYTVEERALIHAKKSGSNEINVDYMNRDSCYSLLGWGLARLFNKLDDFHQC 338
           + K+FRLYS  TVEE+ALI A+++      V+ +NR   ++LL WG + LF+KLD FH  
Sbjct: 681 RTKIFRLYSVCTVEEKALILARQNKRQNKAVENLNRSLTHALLMWGASYLFDKLDHFHSS 740

Query: 339 KTLASGSKIYSEWPFLDNVLQELLDQLLCNREDEPSI-YSFISKAQQDAGAYTREISVID 397
           +T  SG  +  E   +D V+ E    L     +E  +    + +A+   G Y+ + ++  
Sbjct: 741 ETPDSG--VSFEQSIMDGVIHEFSSILSSKGGEENEVKLCLLLEAKHAQGTYSSDSTLFG 798

Query: 398 EKEVQ--DTGPPALFWDKIFLVGG 419
           E  ++  D   P +FW K  L+GG
Sbjct: 799 EDHIKLSDEESPNIFWSK--LLGG 820



 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 164 SFCYEEYWVPVQLSNVQLEQYCAVLLSNPVLLFKNDTVD--ALREIIISIRK-------- 213
           S  Y EYWVPVQLS+VQLEQYC  L S  + L     +D  AL E + S+RK        
Sbjct: 474 SSVYPEYWVPVQLSDVQLEQYCQTLFSKSLSLSSLSKIDLGALEETLNSVRKTCDHPYVM 533

Query: 214 ----QSVIREGLPAEEYLDAEIQVALDGILLETFWKNLFVKDLVRIVGCGLTVTVEYIVV 269
               + ++ + L   E LD EI+ +  G L      +L  K L  I   GL   V Y   
Sbjct: 534 DASLKQLLTKNLELHEILDVEIKAS--GKL------HLLDKMLTHIKKNGLKAVVFYQAT 585

Query: 270 Q 270
           Q
Sbjct: 586 Q 586