Jatropha Genome Database

JcCB0117851.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0117851.20 + phase: 0 /partial
         (59 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58160.1 | Symbols:  | actin binding | chr5:23533724-23539465...    85   1e-17
AT2G25050.1 | Symbols:  | formin homology 2 domain-containing pr...    84   1e-17
AT3G32400.1 | Symbols:  | formin homology 2 domain-containing pr...    82   5e-17
AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761...    82   7e-17
AT5G07650.1 | Symbols:  | formin homology 2 domain-containing pr...    76   3e-15
AT5G07760.1 | Symbols:  | formin homology 2 domain-containing pr...    76   5e-15
AT5G07770.1 | Symbols:  | formin homology 2 domain-containing pr...    72   5e-14
AT1G42980.1 | Symbols:  | formin homology 2 domain-containing pr...    51   1e-07
AT5G07780.1 | Symbols:  | formin homology 2 domain-containing pr...    47   2e-06

>AT5G58160.1 | Symbols:  | actin binding | chr5:23533724-23539465
            FORWARD
          Length = 1324

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/46 (82%), Positives = 44/46 (95%)

Query: 1    SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCE 46
            +SVL LE+SALD DQV+NLIKFCPT+EEMELLKGYTG+K+KLGKCE
Sbjct: 962  NSVLNLEESALDADQVENLIKFCPTREEMELLKGYTGDKDKLGKCE 1007


>AT2G25050.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr2:10654108-10659383 REVERSE
          Length = 1111

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           SSVLAL++S +DVDQVDNLIKFCPTKEE ELLKG+TG KE LG+CEQ
Sbjct: 807 SSVLALDESVIDVDQVDNLIKFCPTKEEAELLKGFTGNKETLGRCEQ 853


>AT3G32400.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr3:13356995-13360572 REVERSE
          Length = 488

 Score = 82.4 bits (202), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 42/47 (89%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           SSVLAL++S +DVDQVDNLIKFCPTKEE ELLKG+ G KE LG+CEQ
Sbjct: 183 SSVLALDESVIDVDQVDNLIKFCPTKEEAELLKGFIGNKETLGRCEQ 229


>AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761
           REVERSE
          Length = 1230

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 43/47 (91%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           S+VLAL+  ALD+DQV+NLIKFCPTKEEMELL+ YTG+KE LGKCEQ
Sbjct: 912 SAVLALDSLALDIDQVENLIKFCPTKEEMELLRNYTGDKEMLGKCEQ 958


>AT5G07650.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2416375-2421814 REVERSE
          Length = 815

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 42/48 (87%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQV 48
           ++VL +++  LDVDQ++NLI+FCPTKEEMELLK YTG+K  LGKCEQ+
Sbjct: 494 AAVLGMDEYVLDVDQIENLIRFCPTKEEMELLKNYTGDKATLGKCEQL 541



 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 40/47 (85%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           ++VLA+++S +DVDQ++ LIKFCPT EEMELLK YTG+K  LGK EQ
Sbjct: 151 TAVLAMDESVVDVDQIEKLIKFCPTNEEMELLKTYTGDKAALGKYEQ 197


>AT5G07760.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2468239-2473657 FORWARD
          Length = 853

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 42/47 (89%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           ++VL +++S LDVDQ++NLI+FCPTKEEM+LLK YTG+K  LGKCEQ
Sbjct: 548 AAVLGMDESVLDVDQIENLIRFCPTKEEMKLLKNYTGDKATLGKCEQ 594


>AT5G07770.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2474816-2479022 FORWARD
          Length = 722

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 41/47 (87%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           ++V+A+++S LDVDQ++NLI+ CPTKEEMELLK YTG+K  LGK EQ
Sbjct: 276 AAVMAMDESVLDVDQIENLIQLCPTKEEMELLKNYTGDKATLGKSEQ 322


>AT1G42980.1 | Symbols:  | formin homology 2 domain-containing
          protein / FH2 domain-containing protein |
          chr1:16133344-16135456 FORWARD
          Length = 299

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 1  SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYT-GEKEKLGKCEQV 48
          ++VL L+ SA+ +DQ+ NLIK C +KEEM+ L+    G+KE LGKCE++
Sbjct: 21 NAVLDLDSSAVIIDQIKNLIKICWSKEEMDRLRNSAGGDKEVLGKCEEI 69


>AT5G07780.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2479707-2482638 FORWARD
          Length = 464

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 4/49 (8%)

Query: 1   SSVLALEDSALD-VDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQV 48
           ++ +A+++S LD  DQ++NLI   PTKE+M+ L  YTG+K   G CEQ+
Sbjct: 169 AAAMAMDESRLDDFDQIENLINLFPTKEDMKFLLTYTGDK---GNCEQL 214