Jatropha Genome Database

JcCB0115461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115461.20 + phase: 0 /partial
         (92 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G31430.1 | Symbols:  | unknown protein | chr3:12795861-127968...    45   9e-06

>AT3G31430.1 | Symbols:  | unknown protein | chr3:12795861-12796871
           REVERSE
          Length = 336

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 5   REINGGVYVFQFFHEVDVHRVLLMCPCTFDNQLLLLERLGSYPTSLDVPLF-FVPLWVQV 63
           R + G  + F F  E  +  VL   P  F++ ++LL+R         +PLF F+P WVQ+
Sbjct: 166 RIMEGRQFHFIFTLEESLETVLRRGPWAFNDWMILLQRWEP-----QIPLFPFIPFWVQI 220

Query: 64  KGLRSGFRSERVLKDMGDRIGQFMEAD 90
           +G+   F +  V++ +G  +GQ ++ D
Sbjct: 221 RGIPFQFLNRGVVEHIGRALGQVLDTD 247