Jatropha Genome Database

JcCB0115061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115061.10 - phase: 0 /partial
         (81 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03415.1 | Symbols: DPB, ATDPB | DPB; protein binding / prote...    96   6e-21
AT5G02470.3 | Symbols: DPA | DPA; transcription factor | chr5:54...    72   1e-13
AT5G02470.2 | Symbols: DPA | DPA; transcription factor | chr5:54...    72   1e-13
AT5G02470.1 | Symbols: DPA | DPA; transcription factor | chr5:54...    72   1e-13

>AT5G03415.1 | Symbols: DPB, ATDPB | DPB; protein binding / protein
           heterodimerization | chr5:842842-845200 FORWARD
          Length = 385

 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 41/45 (91%), Positives = 44/45 (97%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERP 45
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDN+VLK MKFC++P
Sbjct: 252 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNFVLKTMKFCDQP 296


>AT5G02470.3 | Symbols: DPA | DPA; transcription factor |
           chr5:542562-544423 REVERSE
          Length = 292

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 34/40 (85%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMK 40
           T PHA VE+EISEDMQLVH DFNSTPF +HDD Y+LK M+
Sbjct: 203 TNPHAVVEIEISEDMQLVHLDFNSTPFSVHDDAYILKLMQ 242


>AT5G02470.2 | Symbols: DPA | DPA; transcription factor |
           chr5:542562-544423 REVERSE
          Length = 292

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 34/40 (85%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMK 40
           T PHA VE+EISEDMQLVH DFNSTPF +HDD Y+LK M+
Sbjct: 203 TNPHAVVEIEISEDMQLVHLDFNSTPFSVHDDAYILKLMQ 242


>AT5G02470.1 | Symbols: DPA | DPA; transcription factor |
           chr5:542562-544423 REVERSE
          Length = 292

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 34/40 (85%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMK 40
           T PHA VE+EISEDMQLVH DFNSTPF +HDD Y+LK M+
Sbjct: 203 TNPHAVVEIEISEDMQLVHLDFNSTPFSVHDDAYILKLMQ 242