Jatropha Genome Database

JcCB0113371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0113371.20 - phase: 0 /partial
         (197 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09860.1 | Symbols:  | nuclear matrix protein-related | chr5:...   228   2e-60

>AT5G09860.1 | Symbols:  | nuclear matrix protein-related |
           chr5:3066815-3070733 FORWARD
          Length = 599

 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/190 (63%), Positives = 138/190 (72%), Gaps = 14/190 (7%)

Query: 1   NALTDPQRVRTPSITEYWKPLAEDMDPSAGIEAEYHHKNNRVYCWKGLRFSARQDLDGFS 60
           NALTD QRVRTP I +YWKPLAEDMDPSAGIE EYHHKNNRVYCWKGLRF+ARQDL+GFS
Sbjct: 415 NALTDSQRVRTPDIADYWKPLAEDMDPSAGIEDEYHHKNNRVYCWKGLRFTARQDLEGFS 474

Query: 61  RFTDHGIEGVVPLELLPPDVRSKYQAKPNDRSKRAKKEEVKGASNQAEDNQITTPASVLD 120
           RFT+ GIEGVVP+ELLPP+VRSKYQAKPN+++KRAKKEE KG S++ E NQI    S  +
Sbjct: 475 RFTEMGIEGVVPVELLPPEVRSKYQAKPNEKAKRAKKEETKGGSHETEGNQIGVSNSEAE 534

Query: 121 GEGIRTDEXXXXXXXXXXXXXXXXXXQGGTPTPEEHQKQ-SPDTDGGQEAGQLEADGEG- 178
            EG R D                      TPTPEE Q+    DT+ GQEAGQ+E DGE  
Sbjct: 535 AEGGRGDAETMESDAI-----------ADTPTPEEQQRLGGSDTENGQEAGQIE-DGETE 582

Query: 179 DAALIDGETD 188
           +A L+D + D
Sbjct: 583 EAGLMDTDLD 592