Jatropha Genome Database

JcCB0113371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0113371.10 + phase: 2 /partial
         (182 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12300.1 | Symbols:  | unknown protein | chr3:3921787-3923092...   306   3e-84

>AT3G12300.1 | Symbols:  | unknown protein | chr3:3921787-3923092
           REVERSE
          Length = 190

 Score =  306 bits (785), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 140/160 (87%), Positives = 154/160 (96%)

Query: 14  VSNGHVKRPHDEDIQSNVLEIVGSNIQSTYITCPVDPAATLGIKLPFLVMIVKNLKKYFT 73
           V +GHVKR HD+DIQSNVLE+VGSNIQSTYITCP D +ATLGIKLPFLV++VK++KKYF+
Sbjct: 29  VVDGHVKRCHDDDIQSNVLEVVGSNIQSTYITCPADLSATLGIKLPFLVLVVKDMKKYFS 88

Query: 74  FEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLKMDEGWNQIQLNLADFTRRAYGTNY 133
           FEIQ+LDDKNVRRRFRASNFQA+TRVKPYICTMPLKMDEGWNQIQLNLAD TRRAYGTNY
Sbjct: 89  FEIQILDDKNVRRRFRASNFQAVTRVKPYICTMPLKMDEGWNQIQLNLADLTRRAYGTNY 148

Query: 134 VETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQ 173
            ETLRVQ+HANCRLRRIYF+DRLYSEEELPPEFKLYLP+Q
Sbjct: 149 AETLRVQIHANCRLRRIYFADRLYSEEELPPEFKLYLPVQ 188